Variant report

Variant	rs11611681
Chromosome Location	chr12:119446673-119446674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11069232	0.85[ASN][1000 genomes]
rs12578696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12580179	0.85[ASN][1000 genomes]
rs12580370	0.85[ASN][1000 genomes]
rs1405050	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2393464	0.85[ASN][1000 genomes]
rs61937960	0.84[ASN][1000 genomes]
rs61937964	0.85[ASN][1000 genomes]
rs61937965	0.85[ASN][1000 genomes]
rs61937967	0.85[ASN][1000 genomes]
rs61937968	0.85[ASN][1000 genomes]
rs7306404	0.96[CEU][hapmap];0.87[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046251	chr12:119353064-119467301	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541615	chr12:119353064-119467301	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119440800-119446800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:119440800-119448000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:119441000-119446800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:119443000-119447600	Enhancers	Fetal Brain Male	brain
5	chr12:119443200-119446800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:119445600-119446800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:119445800-119446800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:119446000-119446800	Enhancers	Liver	Liver
9	chr12:119446200-119447200	Enhancers	Pancreas	Pancrea
10	chr12:119446200-119447600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:119446400-119446800	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr12:119446400-119446800	Bivalent Enhancer	Fetal Lung	lung
13	chr12:119446400-119446800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr12:119446400-119446800	Enhancers	Placenta	Placenta
15	chr12:119446400-119447000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
16	chr12:119446400-119447200	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr12:119446400-119447400	Flanking Active TSS	Fetal Brain Female	brain
18	chr12:119446600-119446800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr12:119446600-119446800	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr12:119446600-119446800	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr12:119446600-119446800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:119446600-119447000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr12:119446600-119447000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr12:119446600-119447000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:119446600-119447000	Active TSS	Brain Germinal Matrix	brain
26	chr12:119446600-119447200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr12:119446600-119447200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr12:119446600-119447200	Enhancers	Gastric	stomach
29	chr12:119446600-119447400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
30	chr12:119446600-119447600	Bivalent Enhancer	Fetal Stomach	stomach

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