Variant report

Variant	rs11612335
Chromosome Location	chr12:10474096-10474097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10743881	0.87[ASN][1000 genomes]
rs10772258	0.87[EUR][1000 genomes]
rs10845104	0.85[ASN][1000 genomes]
rs10845106	1.00[EUR][1000 genomes]
rs11608254	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12303914	0.99[EUR][1000 genomes]
rs12304713	0.87[ASN][1000 genomes]
rs12315681	0.87[ASN][1000 genomes]
rs12315815	0.87[ASN][1000 genomes]
rs12813197	0.99[EUR][1000 genomes]
rs12813575	0.87[ASN][1000 genomes]
rs12817905	0.87[ASN][1000 genomes]
rs12828540	0.87[ASN][1000 genomes]
rs12832489	0.87[ASN][1000 genomes]
rs17206564	0.93[ASN][1000 genomes]
rs2537765	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2537793	0.87[ASN][1000 genomes]
rs2617128	0.87[ASN][1000 genomes]
rs34282122	0.87[ASN][1000 genomes]
rs34790670	0.87[ASN][1000 genomes]
rs34859528	0.87[ASN][1000 genomes]
rs34956502	0.87[ASN][1000 genomes]
rs35518026	0.87[ASN][1000 genomes]
rs35868193	0.87[ASN][1000 genomes]
rs4102739	0.87[EUR][1000 genomes]
rs4763505	0.88[EUR][1000 genomes]
rs56272210	0.84[ASN][1000 genomes]
rs58700703	0.87[ASN][1000 genomes]
rs71450033	0.87[ASN][1000 genomes]
rs71450034	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv605	chr12:10448638-10494208	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv898759	chr12:10454556-10583365	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv3432683	chr12:10470734-10527581	Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv3351751	chr12:10472734-10522269	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10454800-10474400	Weak transcription	Left Ventricle	heart
2	chr12:10469400-10476600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:10472600-10474200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:10473200-10474600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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