Variant report

Variant	rs11612660
Chromosome Location	chr12:9964303-9964304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10128846	0.81[CEU][hapmap]
rs10772159	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10844860	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2058561	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2192443	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7137997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7299568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964276	0.81[CEU][hapmap]
rs917914	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11612660	TNFRSF1A	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9962600-9964600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:9962800-9965000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:9963200-9964600	Enhancers	Primary B cells from cord blood	blood
4	chr12:9963200-9964600	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:9963200-9964600	Enhancers	Primary T cells from cord blood	blood
6	chr12:9963600-9966200	Weak transcription	Thymus	Thymus
7	chr12:9963800-9966000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:9963800-9966200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:9963800-9966200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:9963800-9966200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:9963800-9966200	Weak transcription	Fetal Thymus	thymus
12	chr12:9963800-9966200	Weak transcription	GM12878-XiMat	blood
13	chr12:9964000-9964400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr12:9964000-9966000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:9964000-9966400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:9964200-9966000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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