Variant report

Variant	rs11613082
Chromosome Location	chr12:58513237-58513238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11172462	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2456644	0.83[ASN][1000 genomes]
rs2733444	0.83[ASN][1000 genomes]
rs2733448	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7136627	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv729	chr12:58490094-58535466	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760225	chr12:58490832-58514112	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3332556	chr12:58499734-58525494	Enhancers Active TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv3367170	chr12:58500734-58523126	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
6	esv3487541	chr12:58508385-58513683	Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv2002221	chr12:58509438-58513923	Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv2587357	chr12:58509475-58514805	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3487530	chr12:58509493-58513830	Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv11044	chr12:58509503-58513705	Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv3487519	chr12:58509549-58513821	Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv3487552	chr12:58509558-58513827	Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3487508	chr12:58509564-58513770	Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3502252	chr12:58509613-58513748	Enhancers	n/a	n/a	inside rSNPs	n/a
15	esv3487563	chr12:58509628-58513746	Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv3502263	chr12:58509628-58513746	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58513000-58514000	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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