Variant report

Variant	rs11613617
Chromosome Location	chr12:67929800-67929801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67921567..67923313-chr12:67929508..67932391,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11176781	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12427296	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs33967208	0.85[EUR][1000 genomes]
rs9668095	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67919200-67933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:67925200-67934800	Weak transcription	Gastric	stomach
3	chr12:67927600-67930400	Enhancers	Fetal Intestine Large	intestine
4	chr12:67927800-67930000	Enhancers	Stomach Mucosa	stomach
5	chr12:67928000-67930200	Enhancers	Duodenum Mucosa	Duodenum
6	chr12:67928000-67930400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:67928400-67929800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:67928400-67929800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:67928400-67930000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr12:67928400-67930000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:67928400-67930000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:67928400-67930200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:67928400-67930400	Enhancers	Fetal Intestine Small	intestine
14	chr12:67928600-67929800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr12:67928600-67930000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:67928600-67930200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr12:67928600-67930200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:67929000-67933000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:67929000-67933600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:67929000-67933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:67929000-67933800	Weak transcription	NHEK	skin
22	chr12:67929200-67933000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:67929200-67933200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:67929200-67934600	Weak transcription	NH-A	brain
25	chr12:67929400-67931200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:67929400-67931200	Weak transcription	Esophagus	oesophagus
27	chr12:67929600-67932800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:67929600-67933800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr12:67929600-67933800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr12:67929600-67933800	Weak transcription	HMEC	breast
31	chr12:67929600-67934600	Weak transcription	HSMM	muscle
32	chr12:67929800-67931000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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