Variant report
| Variant | rs11613829 |
|---|---|
| Chromosome Location | chr12:40784253-40784254 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:40768243..40769926-chr12:40782774..40784277,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11564113 | 1.00[JPT][hapmap] |
| rs11564270 | 0.93[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs12230935 | 0.86[EUR][1000 genomes] |
| rs17443421 | 1.00[JPT][hapmap] |
| rs17443552 | 1.00[JPT][hapmap] |
| rs17444103 | 1.00[JPT][hapmap] |
| rs17444542 | 1.00[JPT][hapmap] |
| rs17444730 | 1.00[CEU][hapmap] |
| rs17465716 | 1.00[JPT][hapmap] |
| rs17465849 | 1.00[JPT][hapmap] |
| rs17465891 | 1.00[JPT][hapmap] |
| rs17466030 | 1.00[JPT][hapmap] |
| rs17466220 | 1.00[JPT][hapmap] |
| rs17466269 | 1.00[JPT][hapmap] |
| rs17466297 | 1.00[JPT][hapmap] |
| rs17466339 | 1.00[JPT][hapmap] |
| rs17466451 | 1.00[JPT][hapmap] |
| rs17466633 | 1.00[JPT][hapmap] |
| rs17484258 | 1.00[CHB][hapmap] |
| rs17490578 | 1.00[JPT][hapmap] |
| rs17490620 | 1.00[JPT][hapmap] |
| rs17490762 | 1.00[JPT][hapmap] |
| rs17491110 | 1.00[JPT][hapmap] |
| rs17491410 | 1.00[JPT][hapmap] |
| rs17492138 | 1.00[JPT][hapmap] |
| rs17519797 | 1.00[JPT][hapmap] |
| rs17520634 | 1.00[JPT][hapmap] |
| rs17520655 | 1.00[JPT][hapmap] |
| rs28365243 | 1.00[JPT][hapmap] |
| rs3751174 | 1.00[YRI][hapmap] |
| rs61475818 | 0.82[EUR][1000 genomes] |
| rs7966550 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832377 | chr12:40704881-40855223 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv899032 | chr12:40735939-40827479 | Weak transcription ZNF genes & repeats Strong transcription Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv558598 | chr12:40742363-40828264 | Strong transcription Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 5 | nsv1047639 | chr12:40774370-40804386 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
