Variant report

Variant	rs116139315
Chromosome Location	chr15:82397758-82397759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv570242	chr15:82370616-82409727	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv528511	chr15:82391287-82404705	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv16537	chr15:82396887-82401477	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82393000-82397800	Weak transcription	Osteobl	bone
2	chr15:82393400-82398000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:82393400-82399200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:82393400-82399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:82393600-82397800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:82393600-82404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:82396400-82406000	Weak transcription	Right Atrium	heart
8	chr15:82396600-82399200	Weak transcription	K562	blood
9	chr15:82396800-82398200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:82397000-82398400	Enhancers	HSMMtube	muscle
11	chr15:82397200-82401600	Enhancers	HSMM	muscle
12	chr15:82397400-82399600	Enhancers	Placenta	Placenta
13	chr15:82397600-82397800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr15:82397600-82398800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:82397600-82399400	Enhancers	HMEC	breast
16	chr15:82397600-82399600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:82397600-82399600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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