Variant report

Variant	rs116160119
Chromosome Location	chr4:8534918-8534919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8480343..8482118-chr4:8533933..8535799,2	MCF-7	breast:
2	chr4:8534354..8538693-chr4:8538746..8544060,9	MCF-7	breast:
3	chr4:8499557..8501918-chr4:8533819..8536050,2	MCF-7	breast:
4	chr4:8495654..8498484-chr4:8534530..8537327,2	MCF-7	breast:
5	chr4:8534257..8535987-chr4:8582200..8584204,2	MCF-7	breast:
6	chr4:8519832..8523485-chr4:8533626..8535724,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155269	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461221	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv593640	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv878612	chr4:8534283-8618916	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8528200-8535600	Weak transcription	Ovary	ovary
2	chr4:8532400-8535800	Weak transcription	NHDF-Ad	bronchial
3	chr4:8532600-8542800	Enhancers	Placenta	Placenta
4	chr4:8533200-8542800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:8533600-8537400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr4:8533800-8537800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:8534000-8535600	Weak transcription	Fetal Kidney	kidney
8	chr4:8534200-8535000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:8534200-8535000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:8534200-8535200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:8534200-8535600	Weak transcription	HSMMtube	muscle
12	chr4:8534400-8535400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:8534400-8535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:8534600-8535000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:8534600-8535000	Weak transcription	Pancreas	Pancrea
16	chr4:8534600-8535600	Enhancers	GM12878-XiMat	blood
17	chr4:8534600-8536000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:8534800-8535600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:8534800-8535600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:8534800-8536800	Weak transcription	Fetal Thymus	thymus

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