Variant report
| Variant | rs11616423 |
|---|---|
| Chromosome Location | chr13:93686382-93686383 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GPC6-1 | chr13:93686167-93686484 | XLOC_010471 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10492623 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10492625 | 0.96[EUR][1000 genomes] |
| rs35651498 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs36071455 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs66958544 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs67564123 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs71429505 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7318703 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9584084 | 0.98[EUR][1000 genomes] |
| rs9589664 | 0.96[EUR][1000 genomes] |
| rs9589670 | 0.96[EUR][1000 genomes] |
| rs9589671 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv2760298 | chr13:93496826-93738391 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv900911 | chr13:93666118-93768862 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11616423 | CAB39L | trans | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
