Variant report

Variant	rs116168235
Chromosome Location	chr9:24495255-24495256
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2753670	chr9:24332200-24532400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1030066	chr9:24419824-24500828	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv613850	chr9:24424199-24539632	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv892797	chr9:24428847-24511918	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv892800	chr9:24462860-24498325	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2757328	chr9:24467996-24528103	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv2759682	chr9:24467996-24528103	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv892801	chr9:24488294-24671257	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv6506	chr9:24490866-24516126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv613852	chr9:24491587-24516727	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv1792862	chr9:24493958-24519023	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	esv2609822	chr9:24494744-24509947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24487800-24496000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:24489400-24496000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:24490200-24495400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:24490200-24496400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:24490400-24495800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:24490600-24495800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:24494600-24495600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:24495000-24502200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:24495200-24498800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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