Variant report

Variant	rs11617011
Chromosome Location	chr13:79987273-79987274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79980707..79982787-chr13:79986192..79988065,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12584193	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12585625	0.83[ASN][1000 genomes]
rs12868295	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8001638	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11617011	RBM26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79980800-80007200	Weak transcription	Spleen	Spleen
2	chr13:79981000-79987400	Weak transcription	Left Ventricle	heart
3	chr13:79981000-79987600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:79981000-79989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:79981000-79991200	Weak transcription	Pancreas	Pancrea
6	chr13:79981000-79997400	Weak transcription	Lung	lung
7	chr13:79981000-79997600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:79981000-79998000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr13:79981000-79998000	Weak transcription	Ovary	ovary
10	chr13:79981000-80007200	Weak transcription	Aorta	Aorta
11	chr13:79981200-79987600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr13:79981200-79991000	Weak transcription	Placenta	Placenta
13	chr13:79981200-79995800	Weak transcription	HSMMtube	muscle
14	chr13:79981200-79997600	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
16	chr13:79981400-79989400	Weak transcription	Brain Substantia Nigra	brain
17	chr13:79981400-79997800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr13:79981400-80000200	Weak transcription	Psoas Muscle	Psoas
19	chr13:79981600-79987400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr13:79981600-79987600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr13:79981600-79987800	Weak transcription	Primary T cells from cord blood	blood
22	chr13:79981600-79987800	Weak transcription	NHDF-Ad	bronchial
23	chr13:79981600-79988400	Weak transcription	Thymus	Thymus
24	chr13:79981600-79989400	Weak transcription	Fetal Brain Male	brain
25	chr13:79981600-79989600	Weak transcription	Fetal Brain Female	brain
26	chr13:79981600-79990400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:79981600-79990800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr13:79981600-79992000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr13:79981600-79992200	Weak transcription	HSMM	muscle
30	chr13:79981600-79993600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr13:79981600-79993600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr13:79981600-79993600	Weak transcription	Adipose Nuclei	Adipose
33	chr13:79981600-79993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr13:79981600-79993800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr13:79981600-79996800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr13:79981600-79997600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr13:79981600-79997600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr13:79981600-79998000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr13:79981600-79998200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr13:79981600-79998200	Weak transcription	Brain Hippocampus Middle	brain
41	chr13:79981800-79987800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:79981800-79993600	Weak transcription	Primary B cells from cord blood	blood
43	chr13:79981800-80001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr13:79982000-79987600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:79982000-79987600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:79982000-79989200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr13:79982000-79991000	Weak transcription	Brain Germinal Matrix	brain
48	chr13:79982000-79992800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr13:79982000-79997200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr13:79982200-79987400	Weak transcription	Fetal Heart	heart

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