Variant report

Variant	rs11617924
Chromosome Location	chr13:49280282-49280283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:49280257-49280307	T-47D	breast:	n/a
2	chr13:49280257-49280307	A549	lung:	n/a
3	chr13:49280257-49280307	SK-N-SH	brain:	n/a
4	chr13:49280257-49280307	HCPEpiC	choroid plexus:	n/a
5	chr13:49280257-49280307	RPTEC	kidney:	n/a
6	chr13:49280257-49280307	HEEpiC	esophagus:	n/a
7	chr13:49280257-49280307	HUVEC	blood vessel:	n/a
8	chr13:49280257-49280307	SK-N-MC	brain:	n/a
9	chr13:49280257-49280307	GM19239	blood:	n/a
10	chr13:49280257-49280307	AG04449	skin:	fetal
11	chr13:49280257-49280307	AG09319	gingival:	n/a
12	chr13:49280257-49280307	LNCaP	prostate:	n/a
13	chr13:49280257-49280307	ovcar-3	ovarian:	n/a
14	chr13:49280257-49280307	GM12878	blood:	n/a
15	chr13:49280257-49280307	CMK	blood:	n/a
16	chr13:49280257-49280307	BJ	skin:	n/a
17	chr13:49280257-49280307	HCM	heart:	n/a
18	chr13:49280257-49280307	AG10803	skin:	n/a
19	chr13:49280257-49280307	ECC-1	luminal epithelium:	n/a
20	chr13:49280257-49280307	HAEpiC	amniotic membrane:	n/a
21	chr13:49280257-49280307	Jurkat	blood:	n/a
22	chr13:49280257-49280307	NT2-D1	testis:	n/a
23	chr13:49280257-49280307	NB4	blood:	n/a
24	chr13:49280257-49280307	Caco-2	colon:	n/a
25	chr13:49280257-49280307	Hepatocyte	liver:	n/a
26	chr13:49280257-49280307	NH-A	brain:	n/a
27	chr13:49280257-49280307	Hela-S3	cervix:	n/a
28	chr13:49280257-49280307	K562	blood:	n/a
29	chr13:49280257-49280307	HRCEpiC	kidney:	n/a
30	chr13:49280257-49280307	SKMC	muscle:	n/a
31	chr13:49280257-49280307	HMEC	breast:	n/a
32	chr13:49280257-49280307	HCT-116	colon:	n/a
33	chr13:49280257-49280307	HNPCEpiC	eye:	n/a
34	chr13:49280257-49280307	HPAEpiC	pulmonary alveolar:	n/a
35	chr13:49280257-49280307	HepG2	liver:	n/a
36	chr13:49280257-49280307	AoSMC	blood vessel:	n/a
37	chr13:49280257-49280307	PrEC	prostate:	n/a
38	chr13:49280257-49280307	HL-60	blood:	n/a
39	chr13:49280257-49280307	AG04450	lung:	fetal
40	chr13:49280257-49280307	NHDF-neo	bronchial:	n/a
41	chr13:49280257-49280307	U87	brain:	n/a
42	chr13:49280257-49280307	IMR90	lung:	fetal
43	chr13:49280257-49280307	HRE	kidney:	n/a
44	chr13:49280257-49280307	GM12891	blood:	n/a
45	chr13:49280257-49280307	H1-hESC	embryonic stem cell:	embryo
46	chr13:49280257-49280307	HIPEpiC	eye:	n/a
47	chr13:49280257-49280307	PANC-1	pancreas:	n/a
48	chr13:49280257-49280307	SAEC	small airway:	n/a
49	chr13:49280257-49280307	MCF10A-Er-Src	breast:	n/a
50	chr13:49280257-49280307	BE2_C	brain:	n/a

No data

Variant related genes	Relation type
CYSLTR2	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2407249	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942773	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942774	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322110	1.00[CHB][hapmap]
rs9595965	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9595970	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9595972	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49251800-49281600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:49252000-49283600	Weak transcription	Primary T cells from cord blood	blood
3	chr13:49256600-49281200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr13:49259000-49302200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:49264000-49283800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr13:49269400-49282000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr13:49271200-49281200	Weak transcription	Left Ventricle	heart
8	chr13:49278600-49283800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:49279200-49284200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr13:49279400-49281000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:49279400-49282600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr13:49279600-49284600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr13:49279800-49281600	ZNF genes & repeats	Dnd41	blood
14	chr13:49280200-49280400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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