Variant report

Variant	rs11618361
Chromosome Location	chr13:30337331-30337332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11618461	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17502901	0.92[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.97[TSI][hapmap]
rs278042	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs2892463	0.91[CHB][hapmap]
rs3783244	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4769022	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4769777	1.00[AFR][1000 genomes]
rs720083	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9314979	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9508555	0.91[CHB][hapmap]
rs9578138	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9579483	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9579486	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30324600-30340400	Weak transcription	Adipose Nuclei	Adipose
2	chr13:30326600-30343200	Weak transcription	Spleen	Spleen
3	chr13:30328400-30340600	Weak transcription	NHLF	lung
4	chr13:30328600-30341200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:30328800-30337400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:30328800-30340400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:30328800-30340400	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:30328800-30340800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:30328800-30347800	Weak transcription	Fetal Kidney	kidney
10	chr13:30328800-30351800	Weak transcription	NH-A	brain
11	chr13:30328800-30352600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:30329200-30338000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr13:30329200-30340000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:30329200-30340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:30329200-30351200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:30330600-30355000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:30333000-30340600	Weak transcription	Fetal Thymus	thymus
18	chr13:30333000-30340600	Weak transcription	Thymus	Thymus
19	chr13:30333200-30338000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr13:30333200-30338400	Weak transcription	Stomach Mucosa	stomach
21	chr13:30333200-30338800	Weak transcription	HSMM	muscle
22	chr13:30333200-30340200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr13:30333200-30340600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:30333200-30353800	Weak transcription	Gastric	stomach
25	chr13:30333200-30360200	Weak transcription	Pancreas	Pancrea
26	chr13:30333200-30368200	Weak transcription	Aorta	Aorta
27	chr13:30333400-30337400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:30333400-30338000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr13:30333400-30340400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr13:30333400-30340600	Weak transcription	Placenta	Placenta
31	chr13:30333400-30345800	Weak transcription	HepG2	liver
32	chr13:30333400-30357000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr13:30333600-30337800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr13:30333600-30338000	Weak transcription	Primary B cells from cord blood	blood
35	chr13:30333600-30340000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr13:30333600-30340400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr13:30333600-30340600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr13:30333600-30376200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:30334800-30340800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr13:30335200-30356800	Weak transcription	GM12878-XiMat	blood
41	chr13:30335400-30338000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr13:30335400-30338200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr13:30335400-30349800	Weak transcription	Fetal Stomach	stomach
44	chr13:30335600-30337800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr13:30335600-30338000	Weak transcription	Fetal Muscle Leg	muscle
46	chr13:30335600-30340600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:30335800-30337800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:30335800-30340600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:30336000-30340600	Weak transcription	Left Ventricle	heart
50	chr13:30336000-30343000	Weak transcription	Rectal Mucosa Donor 29	rectum

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