Variant report

Variant	rs11618810
Chromosome Location	chr13:40073548-40073549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12385888	0.91[ASN][1000 genomes]
rs28609347	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs74044078	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9603548	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757529	chr13:40040036-40090742	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759933	chr13:40040036-40090742	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40061600-40081000	Weak transcription	Osteobl	bone
2	chr13:40064800-40081200	Weak transcription	HSMMtube	muscle
3	chr13:40065600-40075000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:40065600-40075200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:40067200-40074000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:40067600-40074000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:40067600-40074200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:40067800-40078400	Enhancers	Fetal Heart	heart
9	chr13:40068400-40080800	Weak transcription	Fetal Brain Female	brain
10	chr13:40068600-40073600	Weak transcription	Brain Substantia Nigra	brain
11	chr13:40069200-40075000	Weak transcription	Lung	lung
12	chr13:40069200-40080400	Weak transcription	Aorta	Aorta
13	chr13:40070200-40073800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:40071000-40073800	Weak transcription	Adipose Nuclei	Adipose
15	chr13:40071200-40073600	Weak transcription	Fetal Brain Male	brain
16	chr13:40071400-40075800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:40071400-40077200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:40071800-40075600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr13:40071800-40076200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr13:40072200-40074000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:40072600-40075800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr13:40072800-40073800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:40072800-40073800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr13:40072800-40074000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr13:40072800-40074200	Enhancers	Ovary	ovary
26	chr13:40073000-40073800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:40073000-40074000	Enhancers	Right Ventricle	heart
28	chr13:40073000-40075800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr13:40073000-40076000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr13:40073000-40076000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr13:40073000-40076400	Enhancers	Psoas Muscle	Psoas
32	chr13:40073000-40076400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr13:40073000-40076600	Enhancers	Fetal Muscle Leg	muscle
34	chr13:40073000-40077400	Enhancers	Right Atrium	heart
35	chr13:40073000-40077600	Enhancers	Left Ventricle	heart
36	chr13:40073000-40081200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr13:40073200-40075000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:40073200-40075800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:40073400-40073800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr13:40073400-40074000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr13:40073400-40074200	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links