Variant report

Variant	rs11618861
Chromosome Location	chr13:47741796-47741797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11148036	1.00[ASN][1000 genomes]
rs11617284	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9526278	1.00[ASN][1000 genomes]
rs9534558	1.00[ASN][1000 genomes]
rs9591010	1.00[ASN][1000 genomes]
rs9645996	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832599	chr13:47703075-47873855	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47734200-47742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:47739000-47742600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:47740200-47743000	Enhancers	Fetal Lung	lung
4	chr13:47740200-47745000	Weak transcription	Fetal Stomach	stomach
5	chr13:47740800-47742200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:47741600-47741800	Enhancers	NHLF	lung
7	chr13:47741600-47742000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:47741600-47742200	Enhancers	Osteobl	bone
9	chr13:47741600-47742800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr13:47741600-47742800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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