Variant report

Variant	rs11618872
Chromosome Location	chr13:51793234-51793235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11617882	0.81[ASN][1000 genomes]
rs11618155	0.81[ASN][1000 genomes]
rs11618500	0.82[ASN][1000 genomes]
rs1571108	0.82[ASN][1000 genomes]
rs17837198	0.82[ASN][1000 genomes]
rs2031656	0.82[ASN][1000 genomes]
rs57423635	0.82[ASN][1000 genomes]
rs60633523	0.82[ASN][1000 genomes]
rs73194171	0.82[ASN][1000 genomes]
rs73194172	0.82[ASN][1000 genomes]
rs73194176	0.81[ASN][1000 genomes]
rs73194177	0.81[ASN][1000 genomes]
rs73194179	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51786400-51795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51786800-51793800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:51787800-51795400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:51790800-51795400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:51790800-51795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:51792400-51794000	Enhancers	Fetal Lung	lung
7	chr13:51792600-51794400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:51792800-51794400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr13:51792800-51795800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:51793000-51793800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:51793200-51795200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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