Variant report

Variant	rs11619544
Chromosome Location	chr13:37891754-37891755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1324043	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324044	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1324045	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1324046	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17055305	0.97[ASN][1000 genomes]
rs17826073	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1815294	0.81[EUR][1000 genomes]
rs61947174	0.97[ASN][1000 genomes]
rs61947175	0.99[ASN][1000 genomes]
rs7322379	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs765412	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942361	0.81[EUR][1000 genomes]
rs9576245	0.99[ASN][1000 genomes]
rs9576246	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37888600-37892800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:37891000-37891800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:37891000-37891800	ZNF genes & repeats	Esophagus	oesophagus
4	chr13:37891000-37891800	ZNF genes & repeats	Pancreas	Pancrea
5	chr13:37891600-37891800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:37891600-37891800	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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