Variant report

Variant	rs11619880
Chromosome Location	chr13:53474995-53474996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11148266	0.81[AMR][1000 genomes]
rs11619239	0.89[ASN][1000 genomes]
rs11620007	0.80[AMR][1000 genomes]
rs12430130	0.81[AMR][1000 genomes]
rs1980691	0.93[ASN][1000 genomes]
rs61950421	0.82[AFR][1000 genomes]
rs61950422	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61950423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950443	0.92[ASN][1000 genomes]
rs66467851	0.81[AMR][1000 genomes]
rs67502126	0.81[AMR][1000 genomes]
rs7986215	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv900090	chr13:53429453-53495715	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53471400-53477000	Weak transcription	Fetal Brain Female	brain
2	chr13:53471400-53478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:53471600-53476200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:53471600-53476200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:53471600-53476800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:53471600-53478600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:53471600-53478600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:53471600-53479200	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:53472400-53476600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:53473200-53475000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:53473400-53475200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:53473800-53477000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:53474400-53475000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:53474600-53475000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:53474600-53476000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr13:53474800-53476200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:53474800-53476400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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