Variant report

Variant	rs11620786
Chromosome Location	chr14:35147449-35147450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35146210..35148621-chr14:35155232..35157199,2	MCF-7	breast:
2	chr14:35145594..35147705-chr14:35179557..35182556,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12434021	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296174	1.00[ASN][1000 genomes]
rs4488366	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1038360	chr14:35040853-35152886	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv564195	chr14:35107957-35153991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1038792	chr14:35108080-35160860	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1053843	chr14:35110120-35167640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv542028	chr14:35110120-35167640	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1049026	chr14:35110285-35160860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv564196	chr14:35110512-35152084	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv564198	chr14:35118196-35152084	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv542029	chr14:35118620-35152886	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv564199	chr14:35135186-35167362	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35145600-35147600	Enhancers	HepG2	liver
2	chr14:35145800-35148200	Enhancers	Fetal Muscle Leg	muscle
3	chr14:35145800-35148200	Enhancers	NHDF-Ad	bronchial
4	chr14:35146000-35148200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:35146200-35147600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:35146400-35147600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:35146400-35148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:35146400-35152000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:35146400-35152000	Weak transcription	Brain Angular Gyrus	brain
10	chr14:35146600-35147600	Enhancers	NHEK	skin
11	chr14:35146600-35147800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:35146600-35149600	Weak transcription	Liver	Liver
13	chr14:35146600-35152200	Weak transcription	Psoas Muscle	Psoas
14	chr14:35147000-35147800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:35147000-35148000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:35147000-35148000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr14:35147000-35148000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:35147000-35148000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr14:35147000-35148000	Enhancers	HMEC	breast
20	chr14:35147000-35148200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:35147000-35150000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:35147200-35147600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr14:35147200-35147600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:35147200-35147600	Flanking Active TSS	A549	lung
25	chr14:35147200-35147600	Active TSS	HSMM	muscle
26	chr14:35147200-35147800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr14:35147200-35147800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:35147200-35147800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:35147200-35147800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr14:35147200-35147800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:35147200-35147800	Enhancers	K562	blood
32	chr14:35147200-35147800	Flanking Active TSS	NH-A	brain
33	chr14:35147200-35148000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr14:35147200-35148000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr14:35147200-35148000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr14:35147200-35148000	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr14:35147200-35148000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:35147200-35148000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:35147200-35148000	Active TSS	Brain Cingulate Gyrus	brain
40	chr14:35147200-35148000	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr14:35147200-35148200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:35147200-35148200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr14:35147200-35148200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:35147200-35148200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:35147400-35147600	Flanking Active TSS	HUVEC	blood vessel
46	chr14:35147400-35147800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:35147400-35147800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr14:35147400-35147800	Active TSS	Brain Hippocampus Middle	brain
49	chr14:35147400-35147800	Flanking Active TSS	Osteobl	bone
50	chr14:35147400-35148000	Enhancers	HUES6 Cell Line	embryonic stem cell

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