Variant report

Variant	rs11622885
Chromosome Location	chr14:36564242-36564243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11156905	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12589124	0.91[EUR][1000 genomes]
rs1333312	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1467794	0.99[EUR][1000 genomes]
rs1742867	0.96[CEU][hapmap]
rs1742868	0.92[CEU][hapmap]
rs1742869	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1953120	0.92[EUR][1000 genomes]
rs1957313	0.88[CEU][hapmap]
rs1957314	0.88[CEU][hapmap]
rs2183451	0.90[EUR][1000 genomes]
rs2415312	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780312	0.88[CEU][hapmap]
rs2780314	0.92[CEU][hapmap]
rs34081947	0.89[EUR][1000 genomes]
rs34232378	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34613409	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368181	0.92[CEU][hapmap]
rs368187	0.83[EUR][1000 genomes]
rs394246	0.92[CEU][hapmap]
rs395212	0.96[CEU][hapmap]
rs398745	0.92[CEU][hapmap]
rs414155	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs416664	0.95[EUR][1000 genomes]
rs429041	0.92[CEU][hapmap]
rs448145	0.96[CEU][hapmap]
rs6571735	0.96[CEU][hapmap]
rs7145211	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7145546	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7147401	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs8020453	0.82[EUR][1000 genomes]
rs8020481	0.90[EUR][1000 genomes]
rs860200	0.92[CEU][hapmap]
rs884090	0.91[EUR][1000 genomes]
rs950319	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1041441	chr14:36545463-36756347	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv542041	chr14:36545463-36756347	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36560800-36565600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:36561000-36565200	Weak transcription	NHEK	skin
3	chr14:36561000-36565400	Weak transcription	HMEC	breast
4	chr14:36561000-36565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:36561600-36564800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:36561600-36565200	Weak transcription	NHDF-Ad	bronchial
7	chr14:36563600-36564600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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