Variant report

Variant	rs11623352
Chromosome Location	chr14:105855445-105855446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105847451..105849244-chr14:105853752..105857864,3	MCF-7	breast:
2	chr14:105853760..105856019-chr14:105954695..105956610,2	MCF-7	breast:
3	chr14:105854936..105857112-chr14:105858336..105861152,4	K562	blood:

Variant related genes	Relation type
ENSG00000185347	Chromatin interaction
ENSG00000179364	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10149753	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105823600-105863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:105831000-105863800	Weak transcription	Fetal Kidney	kidney
3	chr14:105831400-105864000	Weak transcription	Osteobl	bone
4	chr14:105831600-105863200	Weak transcription	NHDF-Ad	bronchial
5	chr14:105842600-105856000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:105842800-105855800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr14:105842800-105856400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:105842800-105856400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:105844400-105856200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:105844400-105862400	Strong transcription	Brain Germinal Matrix	brain
11	chr14:105844400-105862800	Strong transcription	Fetal Intestine Small	intestine
12	chr14:105844800-105857000	Weak transcription	Stomach Mucosa	stomach
13	chr14:105845200-105857200	Strong transcription	Right Ventricle	heart
14	chr14:105845200-105862600	Strong transcription	Fetal Brain Female	brain
15	chr14:105845400-105855800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:105845600-105855600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr14:105845600-105860800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:105845800-105855600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:105845800-105855600	Strong transcription	Lung	lung
20	chr14:105846200-105855800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:105846400-105857000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:105846600-105855600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:105848000-105864200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:105848400-105864000	Weak transcription	Psoas Muscle	Psoas
25	chr14:105848800-105856400	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:105849800-105863800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr14:105850200-105856000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:105850200-105857600	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr14:105850400-105855800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr14:105850400-105857600	Genic enhancers	Fetal Muscle Leg	muscle
31	chr14:105850400-105863400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:105850400-105864000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:105850600-105856400	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:105851000-105863600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:105851200-105861800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:105851400-105859200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:105851800-105863400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:105852000-105863000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:105852000-105864000	Weak transcription	Liver	Liver
40	chr14:105852200-105856400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:105852200-105864200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:105852400-105856000	Genic enhancers	Adipose Nuclei	Adipose
43	chr14:105852400-105863200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:105852400-105864000	Weak transcription	Left Ventricle	heart
45	chr14:105852400-105864200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:105852600-105864000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr14:105852800-105863800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:105852800-105863800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr14:105853000-105863800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:105853200-105856200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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