Variant report

Variant	rs11624406
Chromosome Location	chr14:78733544-78733545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11159345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641656	1.00[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574431	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11624406	ADCK1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78736600	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78731000-78736600	Weak transcription	Brain Substantia Nigra	brain
3	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:78731400-78736800	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78731400-78748200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:78731600-78737800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:78731800-78736400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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