Variant report

Variant	rs11624424
Chromosome Location	chr14:70980424-70980425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1060681	0.87[MEX][hapmap]
rs12880777	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.92[MEX][hapmap]
rs12893988	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs17475516	0.87[MEX][hapmap]
rs17476399	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs4899359	0.80[EUR][1000 genomes]
rs6573971	0.83[EUR][1000 genomes]
rs7493545	0.96[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.81[AMR][1000 genomes]
rs8016418	0.83[MEX][hapmap]
rs8019852	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11624424	ADAM20	cis	cerebellum	SCAN
rs11624424	PAPLN	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:70965200-70982000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:70968600-70989400	Weak transcription	Pancreas	Pancrea
5	chr14:70973400-70985200	Weak transcription	Left Ventricle	heart
6	chr14:70975800-70990000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:70978200-70980600	Weak transcription	Small Intestine	intestine
8	chr14:70978200-70986600	Weak transcription	Liver	Liver
9	chr14:70978600-70985000	Weak transcription	Aorta	Aorta
10	chr14:70978800-70983000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:70978800-70988600	Weak transcription	Ovary	ovary
12	chr14:70979200-70986800	Weak transcription	Primary T cells from cord blood	blood
13	chr14:70980000-70989400	Weak transcription	Brain Angular Gyrus	brain
14	chr14:70980400-70980800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:70980400-70982600	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:70980400-70982800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:70980400-70983200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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