Variant report

Variant	rs11624613
Chromosome Location	chr14:68828302-68828303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68827778..68831796-chr14:69251511..69256304,4	MCF-7	breast:
2	chr14:68820537..68822571-chr14:68826087..68829022,2	MCF-7	breast:
3	chr14:68715317..68717585-chr14:68825893..68828768,2	MCF-7	breast:
4	chr14:68827902..68830472-chr14:68830504..68833278,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11158733	0.86[AMR][1000 genomes]
rs12432583	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12435322	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12890360	0.84[EUR][1000 genomes]
rs12894080	0.84[EUR][1000 genomes]
rs2331694	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902574	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68824400-68828600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr14:68824400-68829400	Enhancers	Primary T cells from cord blood	blood
4	chr14:68825600-68828400	Enhancers	Brain Substantia Nigra	brain
5	chr14:68825600-68832000	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:68825800-68828400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr14:68825800-68828400	Enhancers	Fetal Heart	heart
8	chr14:68825800-68828400	Enhancers	Hela-S3	cervix
9	chr14:68825800-68828600	Enhancers	Ovary	ovary
10	chr14:68825800-68830200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:68826200-68828400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:68826200-68828400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:68826200-68828600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:68826200-68828600	Enhancers	Pancreas	Pancrea
15	chr14:68826200-68829600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:68826400-68828400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:68826400-68828400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:68826400-68830200	Weak transcription	Fetal Brain Male	brain
20	chr14:68826600-68828400	Enhancers	GM12878-XiMat	blood
21	chr14:68826600-68828400	Enhancers	HMEC	breast
22	chr14:68826600-68828400	Enhancers	NH-A	brain
23	chr14:68826600-68828400	Enhancers	NHEK	skin
24	chr14:68826600-68828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:68826600-68829600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:68826800-68829600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:68826800-68829600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:68826800-68830200	Weak transcription	Brain Germinal Matrix	brain
29	chr14:68826800-68830200	Weak transcription	Colonic Mucosa	Colon
30	chr14:68827000-68828400	Enhancers	NHDF-Ad	bronchial
31	chr14:68827000-68828600	Enhancers	Osteobl	bone
32	chr14:68827000-68828800	Enhancers	HUVEC	blood vessel
33	chr14:68827000-68829600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:68827000-68829600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:68827000-68830200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:68827000-68830200	Weak transcription	Fetal Brain Female	brain
37	chr14:68827000-68831800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:68827200-68828600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:68827200-68829000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:68827200-68829600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:68827200-68829600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:68827200-68829600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr14:68827200-68829600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:68827200-68829600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:68827200-68829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr14:68827200-68830200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:68827200-68830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:68827200-68830200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr14:68827200-68830200	Weak transcription	Placenta	Placenta
50	chr14:68827200-68830200	Weak transcription	Fetal Stomach	stomach

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