Variant report

Variant	rs11625193
Chromosome Location	chr14:81604362-81604363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11621463	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17111530	0.91[EUR][1000 genomes]
rs55695536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58451532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72691611	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72691628	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
2	chr14:81600200-81611000	Weak transcription	Liver	Liver
3	chr14:81600800-81609400	Weak transcription	Fetal Thymus	thymus
4	chr14:81602000-81605800	Weak transcription	Dnd41	blood
5	chr14:81603200-81604400	Enhancers	HSMMtube	muscle
6	chr14:81603200-81604400	Enhancers	Osteobl	bone
7	chr14:81603400-81604400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:81603400-81604400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:81603400-81604400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr14:81603400-81604400	Enhancers	HSMM	muscle
11	chr14:81603400-81604400	Enhancers	NHDF-Ad	bronchial
12	chr14:81603600-81604400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:81603600-81604400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:81603600-81604400	Enhancers	HMEC	breast
15	chr14:81603800-81604400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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