Variant report

Variant	rs11627257
Chromosome Location	chr14:77762264-77762265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77744963..77747141-chr14:77762245..77764781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11624564	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs11624859	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626281	0.98[ASN][1000 genomes]
rs12431465	0.90[ASN][1000 genomes]
rs1544707	0.87[YRI][hapmap]
rs17105672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042045	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs2098380	0.83[CHB][hapmap];0.87[YRI][hapmap]
rs2111699	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2193594	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2216089	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2270421	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2270423	0.86[CHB][hapmap]
rs2287387	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2287395	0.90[CHB][hapmap]
rs2363641	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2363642	0.94[ASN][1000 genomes]
rs2363643	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs2885854	0.88[ASN][1000 genomes]
rs3783986	0.95[JPT][hapmap]
rs3815626	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4147578	0.94[CHB][hapmap]
rs4899650	0.96[CHB][hapmap];0.82[ASN][1000 genomes]
rs4903567	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4903568	0.89[ASN][1000 genomes]
rs4903569	0.81[ASN][1000 genomes]
rs59630055	0.94[ASN][1000 genomes]
rs61990299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574367	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6574368	0.88[ASN][1000 genomes]
rs67873774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142812	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7158951	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs7159558	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7160188	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7160195	0.88[ASN][1000 genomes]
rs8007615	0.88[ASN][1000 genomes]
rs8008449	0.94[ASN][1000 genomes]
rs8009261	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs8009733	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs8016187	0.81[CEU][hapmap];0.92[CHB][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11627257	GSTZ1	cis	Esophagus Mucosa	GTEx
rs11627257	GSTZ1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:77740200-77766800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:77740200-77769800	Weak transcription	Small Intestine	intestine
4	chr14:77740400-77766000	Weak transcription	Stomach Mucosa	stomach
5	chr14:77740800-77766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:77741000-77767400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
8	chr14:77742000-77766600	Strong transcription	Placenta	Placenta
9	chr14:77742200-77767600	Strong transcription	Stomach Smooth Muscle	stomach
10	chr14:77742400-77766400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:77742400-77766400	Strong transcription	Adipose Nuclei	Adipose
12	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:77742600-77766600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:77744000-77771400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:77746600-77767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:77749200-77766400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:77749400-77763000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:77750200-77767400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:77750800-77768000	Weak transcription	K562	blood
20	chr14:77751200-77764600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:77751400-77762600	Weak transcription	Hela-S3	cervix
22	chr14:77751400-77769200	Weak transcription	NHLF	lung
23	chr14:77751400-77769800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:77751400-77775600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:77751800-77767600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:77751800-77775600	Weak transcription	Thymus	Thymus
28	chr14:77752200-77775600	Weak transcription	Fetal Thymus	thymus
29	chr14:77752600-77773000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:77752600-77779200	Weak transcription	Fetal Heart	heart
31	chr14:77753000-77764000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr14:77753600-77762400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:77753600-77771800	Weak transcription	Fetal Brain Male	brain
34	chr14:77753800-77764400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr14:77754400-77763800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr14:77754600-77769200	Weak transcription	NHDF-Ad	bronchial
37	chr14:77754600-77771000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:77755000-77762400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:77756600-77766600	Strong transcription	Brain Cingulate Gyrus	brain
40	chr14:77756800-77767200	Strong transcription	Fetal Muscle Leg	muscle
41	chr14:77757400-77762400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:77757600-77767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:77758200-77765200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr14:77758400-77767800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:77758600-77763200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:77759000-77762400	Strong transcription	Brain Substantia Nigra	brain
47	chr14:77759200-77765800	Weak transcription	HUVEC	blood vessel
48	chr14:77759400-77763800	Weak transcription	NH-A	brain
49	chr14:77759400-77764400	Weak transcription	Fetal Lung	lung
50	chr14:77759400-77767600	Weak transcription	Psoas Muscle	Psoas

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