Variant report

Variant	rs11627702
Chromosome Location	chr14:25512775-25512776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25274769..25276064-chr14:25511769..25512775,13	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11626133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17109537	0.85[AFR][1000 genomes]
rs17257780	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1952494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1952495	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1958384	0.89[ASN][1000 genomes]
rs1958386	0.89[ASN][1000 genomes]
rs2003997	0.81[AFR][1000 genomes]
rs2225269	0.84[AFR][1000 genomes]
rs2332464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4522329	0.88[AFR][1000 genomes]
rs7142942	0.89[ASN][1000 genomes]
rs7151656	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151785	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726519	0.89[ASN][1000 genomes]
rs8007052	0.89[ASN][1000 genomes]
rs8020392	0.89[ASN][1000 genomes]
rs873103	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25492400-25517600	Weak transcription	Psoas Muscle	Psoas
2	chr14:25497200-25515200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:25503800-25515800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:25509000-25513600	Weak transcription	Lung	lung
5	chr14:25509400-25513000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:25510000-25515800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:25510800-25514200	Enhancers	Brain Hippocampus Middle	brain
8	chr14:25510800-25514400	Enhancers	Brain Substantia Nigra	brain
9	chr14:25511000-25513800	Enhancers	Small Intestine	intestine
10	chr14:25511000-25514200	Genic enhancers	Fetal Lung	lung
11	chr14:25511000-25517400	Weak transcription	HSMMtube	muscle
12	chr14:25511200-25514000	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:25511400-25513000	Enhancers	Rectal Smooth Muscle	rectum
14	chr14:25511400-25513600	Enhancers	Brain Anterior Caudate	brain
15	chr14:25511800-25512800	Weak transcription	HSMM	muscle
16	chr14:25511800-25513000	Enhancers	Fetal Heart	heart
17	chr14:25511800-25513600	Weak transcription	GM12878-XiMat	blood
18	chr14:25511800-25515600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:25511800-25515800	Weak transcription	Gastric	stomach
20	chr14:25511800-25517400	Weak transcription	Fetal Brain Male	brain
21	chr14:25512000-25513600	Weak transcription	Pancreas	Pancrea
22	chr14:25512000-25513600	Weak transcription	Right Ventricle	heart
23	chr14:25512000-25515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:25512000-25515800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:25512000-25517000	Weak transcription	Fetal Intestine Large	intestine
26	chr14:25512200-25512800	Weak transcription	Brain Angular Gyrus	brain
27	chr14:25512200-25513000	Weak transcription	Left Ventricle	heart
28	chr14:25512200-25513200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:25512200-25513400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:25512200-25513600	Weak transcription	Placenta	Placenta
31	chr14:25512200-25515200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:25512200-25515800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:25512200-25517200	Weak transcription	Adipose Nuclei	Adipose
34	chr14:25512200-25517200	Weak transcription	Stomach Mucosa	stomach
35	chr14:25512400-25512800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:25512400-25512800	Weak transcription	NHLF	lung
37	chr14:25512400-25513200	Weak transcription	Right Atrium	heart
38	chr14:25512400-25515600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:25512400-25516000	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:25512400-25516800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:25512400-25517200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr14:25512400-25517400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:25512600-25512800	Weak transcription	Fetal Intestine Small	intestine
44	chr14:25512600-25513600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr14:25512600-25515600	Weak transcription	HepG2	liver
46	chr14:25512600-25515800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:25512600-25517600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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