Variant report

Variant	rs11628655
Chromosome Location	chr14:31889829-31889830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:31889367-31890414	GM12878	blood:	n/a	n/a
2	CTCF	chr14:31889820-31889970	NHDF-neo	bronchial:	n/a	n/a
3	USF1	chr14:31889630-31890060	SK-N-SH_RA	brain:	n/a	n/a
4	ETS1	chr14:31889466-31890188	A549	lung:	n/a	chr14:31889764-31889775
5	YY1	chr14:31889630-31890157	SK-N-SH_RA	brain:	n/a	chr14:31889893-31889907 chr14:31889766-31889775 chr14:31889766-31889780
6	POLR2A	chr14:31889530-31890273	GM12878	blood:	n/a	n/a
7	TCF7L2	chr14:31888807-31890235	Hela-S3	cervix:	n/a	n/a
8	CTCF	chr14:31889720-31889870	WERI-Rb-1	eye:	n/a	n/a
9	POLR2A	chr14:31889416-31890240	PANC-1	pancreas:	n/a	n/a
10	NFYB	chr14:31889665-31890049	GM12878	blood:	n/a	n/a
11	CTCF	chr14:31889760-31889910	WERI-Rb-1	eye:	n/a	n/a
12	EP300	chr14:31889630-31890040	SK-N-SH_RA	brain:	n/a	chr14:31889765-31889774 chr14:31889763-31889772 chr14:31889870-31889886 chr14:31889871-31889887
13	CTCF	chr14:31889627-31889875	Gliobla	brain:	n/a	n/a
14	MAX	chr14:31889407-31890088	A549	lung:	n/a	chr14:31889804-31889813 chr14:31889792-31889802
15	POU2F2	chr14:31889564-31889838	GM12878	blood:	n/a	n/a
16	POU2F2	chr14:31889418-31890297	GM12878	blood:	n/a	n/a
17	POLR2A	chr14:31889170-31890316	GM12892	blood:	n/a	n/a
18	NFIC	chr14:31889542-31890334	GM12878	blood:	n/a	n/a
19	HDAC2	chr14:31888846-31890344	HepG2	liver:	n/a	chr14:31889103-31889112
20	CTCF	chr14:31889700-31889850	GM12872	blood:	n/a	n/a
21	CTCF	chr14:31889646-31890009	Spleen_OC	spleen:	n/a	n/a
22	SIN3AK20	chr14:31889230-31890120	PANC-1	pancreas:	n/a	n/a
23	FOSL2	chr14:31889392-31890140	A549	lung:	n/a	n/a
24	POLR2A	chr14:31889248-31890336	HL-60	blood:	n/a	n/a
25	POLR2A	chr14:31889425-31890173	H1-neurons	neurons:	n/a	n/a
26	RCOR1	chr14:31889104-31890333	HepG2	liver:	n/a	n/a
27	TCF7L2	chr14:31889177-31890059	HCT-116	colon:	n/a	n/a
28	CTCF	chr14:31889662-31889889	MCF-7	breast:	n/a	n/a
29	POLR2A	chr14:31889176-31890375	GM18505	blood:	n/a	n/a
30	CHD1	chr14:31889224-31890193	GM12878	blood:	n/a	chr14:31889629-31889639
31	POLR2A	chr14:31889061-31890271	K562	blood:	n/a	n/a
32	CTCF	chr14:31889647-31889882	GM12891	blood:	n/a	n/a
33	TAF1	chr14:31889474-31889902	GM12891	blood:	n/a	n/a
34	SP4	chr14:31889579-31890064	H1-hESC	embryonic stem cell:	n/a	chr14:31889789-31889805 chr14:31889805-31889821 chr14:31889791-31889802
35	TAF1	chr14:31889251-31890045	MCF-7	breast:	n/a	n/a
36	FOSL2	chr14:31888956-31890290	HepG2	liver:	n/a	n/a
37	POLR2A	chr14:31889084-31890370	MCF10A-Er-Src	breast:	n/a	n/a
38	YY1	chr14:31889543-31890161	ECC-1	luminal epithelium:	n/a	chr14:31889893-31889907 chr14:31889766-31889775 chr14:31889766-31889780
39	ZNF143	chr14:31888734-31890363	Hela-S3	cervix:	n/a	chr14:31889870-31889880 chr14:31889763-31889773
40	NFYB	chr14:31889747-31889952	Hela-S3	cervix:	n/a	n/a
41	PAX5	chr14:31889730-31890070	GM12892	blood:	n/a	chr14:31889936-31889945
42	RELA	chr14:31889537-31890306	GM15510	blood:	n/a	n/a
43	USF1	chr14:31889521-31890024	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr14:31889067-31890198	MCF-7	breast:	n/a	chr14:31889804-31889813 chr14:31889792-31889802
45	CTCF	chr14:31889649-31889970	Fibrobl	skin:	n/a	n/a
46	CTCF	chr14:31889700-31889850	HUVEC	blood vessel:	n/a	n/a
47	CHD2	chr14:31889120-31890331	GM12878	blood:	n/a	chr14:31889629-31889639
48	RAD21	chr14:31888987-31890284	HepG2	liver:	n/a	chr14:31889324-31889338
49	MAX	chr14:31889272-31890137	H1-hESC	embryonic stem cell:	n/a	chr14:31889804-31889813 chr14:31889792-31889802
50	MYC	chr14:31889574-31889943	MCF-7	breast:	n/a	chr14:31889804-31889813 chr14:31889792-31889802

No.	Distal block	Cell Line	Cell type
1	chr14:31887818..31891601-chr14:31923594..31927929,15	K562	blood:
2	chr14:31889397..31890218-chr9:91933424..91934086,2	Hela-S3	cervix:
3	chr14:31889308..31890174-chr6:31795417..31795943,2	Hela-S3	cervix:
4	chr13:37574206..37574708-chr14:31889229..31890178,2	Hela-S3	cervix:
5	chr14:31090018..31093014-chr14:31887951..31890191,2	MCF-7	breast:
6	chr14:31889495..31890465-chr2:61698381..61699106,2	Hela-S3	cervix:
7	chr14:31887046..31892106-chr14:31923824..31928892,9	K562	blood:
8	chr14:31854067..31858154-chr14:31887468..31890013,3	MCF-7	breast:
9	chr14:31676619..31677277-chr14:31889333..31889964,2	K562	blood:
10	chr14:31676274..31678860-chr14:31889133..31891124,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250365	TF binding region
HEATR5A	TF binding region
ENSG00000203546	Chromatin interaction
ENSG00000129493	Chromatin interaction
ENSG00000270820	Chromatin interaction
ENSG00000187742	Chromatin interaction
ENSG00000092148	Chromatin interaction
ENSG00000120699	Chromatin interaction
ENSG00000120697	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000129480	Chromatin interaction
ENSG00000092108	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10135385	1.00[ASN][1000 genomes]
rs10138277	1.00[AFR][1000 genomes]
rs1815318	0.88[AFR][1000 genomes]
rs2182255	0.93[AFR][1000 genomes]
rs2378859	1.00[AFR][1000 genomes]
rs4981095	1.00[AFR][1000 genomes]
rs4981848	1.00[AFR][1000 genomes]
rs7151048	0.86[AFR][1000 genomes]
rs7160846	1.00[AFR][1000 genomes]
rs8003122	1.00[AFR][1000 genomes]
rs8016369	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31887200-31890000	Active TSS	Hela-S3	cervix
2	chr14:31887400-31890000	Active TSS	NHLF	lung
3	chr14:31887600-31890600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:31887800-31890000	Active TSS	A549	lung
5	chr14:31887800-31890200	Active TSS	Right Atrium	heart
6	chr14:31888000-31890000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:31888000-31890000	Active TSS	NHDF-Ad	bronchial
8	chr14:31888200-31890000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:31888200-31890000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:31888200-31890000	Active TSS	Fetal Lung	lung
11	chr14:31888200-31890000	Active TSS	HMEC	breast
12	chr14:31888200-31890200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:31888200-31890200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:31888200-31890200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:31888200-31890200	Active TSS	HSMMtube	muscle
16	chr14:31888200-31890400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr14:31888200-31890400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:31888200-31890400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:31888200-31890400	Active TSS	Colonic Mucosa	Colon
20	chr14:31888200-31890400	Active TSS	Fetal Stomach	stomach
21	chr14:31888200-31890400	Active TSS	Stomach Smooth Muscle	stomach
22	chr14:31888200-31890400	Active TSS	K562	blood
23	chr14:31888200-31890600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:31888400-31890000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:31888400-31890000	Active TSS	Fetal Intestine Small	intestine
26	chr14:31888400-31890000	Active TSS	HSMM	muscle
27	chr14:31888400-31890200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr14:31888400-31890200	Active TSS	Right Ventricle	heart
29	chr14:31888400-31890400	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr14:31888400-31890400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:31888400-31890400	Active TSS	Fetal Intestine Large	intestine
32	chr14:31888400-31890400	Active TSS	Fetal Muscle Leg	muscle
33	chr14:31888400-31890400	Active TSS	Placenta	Placenta
34	chr14:31888400-31890400	Active TSS	Psoas Muscle	Psoas
35	chr14:31888400-31890400	Active TSS	NH-A	brain
36	chr14:31888400-31890400	Active TSS	Osteobl	bone
37	chr14:31888600-31890000	Active TSS	Muscle Satellite Cultured Cells	--
38	chr14:31888600-31890000	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr14:31888600-31890000	Active TSS	Duodenum Mucosa	Duodenum
40	chr14:31888600-31890000	Active TSS	Stomach Mucosa	stomach
41	chr14:31888600-31890000	Active TSS	GM12878-XiMat	blood
42	chr14:31888600-31890000	Active TSS	NHEK	skin
43	chr14:31888600-31890200	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr14:31888600-31890200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:31888600-31890200	Active TSS	Aorta	Aorta
46	chr14:31888600-31890200	Active TSS	Colon Smooth Muscle	Colon
47	chr14:31888600-31890200	Active TSS	Fetal Kidney	kidney
48	chr14:31888600-31890200	Active TSS	Rectal Smooth Muscle	rectum
49	chr14:31888600-31890400	Active TSS	H9 Cell Line	embryonic stem cell
50	chr14:31888600-31890400	Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links