Variant report

Variant	rs116290499
Chromosome Location	chr3:140910827-140910828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140910735..140911727-chr3:141170663..141171495,2	K562	blood:
2	chr20:46012466..46013414-chr3:140910734..140911750,3	MCF-7	breast:
3	chr3:140718217..140720012-chr3:140910812..140911779,16	MCF-7	breast:
4	chr2:205663276..205663797-chr3:140910816..140911375,4	K562	blood:
5	chr3:140582774..140583595-chr3:140910775..140911453,2	K562	blood:
6	chr3:140641214..140642093-chr3:140910815..140911387,4	K562	blood:
7	chr3:140717895..140719577-chr3:140910528..140912066,26	MCF-7	breast:
8	chr3:140616851..140618321-chr3:140910804..140911746,7	K562	blood:
9	chr3:140867484..140869090-chr3:140909634..140911456,2	K562	blood:
10	chr3:140769329..140770294-chr3:140910775..140911651,5	MCF-7	breast:
11	chr3:140730037..140731014-chr3:140910554..140911830,26	MCF-7	breast:
12	chr3:140730111..140731019-chr3:140910769..140911416,5	K562	blood:
13	chr3:140768713..140769273-chr3:140910536..140911423,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv14493	chr3:140909357-140911954	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv591891	chr3:140909743-140911331	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140905800-140911400	Weak transcription	Thymus	Thymus
2	chr3:140910400-140911000	Enhancers	Osteobl	bone
3	chr3:140910400-140911200	Enhancers	HMEC	breast
4	chr3:140910400-140911600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:140910600-140911000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:140910600-140911200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:140910600-140911200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:140910600-140912400	Enhancers	Dnd41	blood
9	chr3:140910800-140911000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:140910800-140911000	Enhancers	Fetal Muscle Leg	muscle
11	chr3:140910800-140911600	Enhancers	Primary T helper naive cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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