Variant report

Variant	rs116292300
Chromosome Location	chr11:68312003-68312004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68227373..68229152-chr11:68311187..68313103,2	MCF-7	breast:
2	chr11:68311501..68313206-chr11:68322676..68324188,2	MCF-7	breast:
3	chr11:68310824..68313673-chr11:68317930..68320124,2	MCF-7	breast:
4	chr11:68311700..68314036-chr11:68318661..68320225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110075	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	nsv372	chr11:68311070-68340142	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68277600-68336000	Strong transcription	Dnd41	blood
2	chr11:68283000-68358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:68296600-68316800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr11:68299200-68384000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:68300600-68313800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:68301000-68313400	Strong transcription	Primary T cells from cord blood	blood
7	chr11:68301200-68312800	Weak transcription	Stomach Mucosa	stomach
8	chr11:68301600-68316800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:68302800-68313400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:68303800-68317000	Strong transcription	Liver	Liver
11	chr11:68303800-68317400	Strong transcription	Primary B cells from cord blood	blood
12	chr11:68304000-68384400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:68304400-68317000	Weak transcription	Small Intestine	intestine
14	chr11:68304800-68313200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:68305000-68317000	Strong transcription	Duodenum Mucosa	Duodenum
16	chr11:68305200-68313200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:68305200-68316600	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr11:68305200-68316800	Strong transcription	Fetal Intestine Large	intestine
19	chr11:68305200-68317000	Strong transcription	Thymus	Thymus
20	chr11:68305400-68316800	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:68305600-68312400	Strong transcription	Fetal Brain Female	brain
22	chr11:68306200-68312200	Strong transcription	Fetal Intestine Small	intestine
23	chr11:68306200-68313800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:68306800-68318200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:68307400-68326600	Weak transcription	Fetal Brain Male	brain
26	chr11:68307600-68312800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:68307600-68313000	Weak transcription	HSMMtube	muscle
28	chr11:68307600-68338800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:68307800-68319400	Weak transcription	Fetal Kidney	kidney
30	chr11:68308600-68313200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:68308600-68324200	Strong transcription	GM12878-XiMat	blood
32	chr11:68308800-68327200	Strong transcription	Hela-S3	cervix
33	chr11:68309200-68312200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:68309200-68313600	Strong transcription	HepG2	liver
35	chr11:68309200-68315400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:68309400-68312600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:68309400-68384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:68309600-68312400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:68309600-68313400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:68309600-68314000	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:68309600-68317400	Strong transcription	Fetal Thymus	thymus
42	chr11:68309800-68312800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:68309800-68313000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:68309800-68313000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:68309800-68313200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:68309800-68313200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:68309800-68314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:68309800-68334400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:68310000-68313400	Strong transcription	K562	blood
50	chr11:68310200-68312600	Strong transcription	Primary hematopoietic stem cells	blood

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