Variant report

Variant	rs11629683
Chromosome Location	chr15:33993143-33993144
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:33584630..33585563-chr15:33992613..33993545,3	K562	blood:
2	chr15:33601386..33602463-chr15:33992935..33994146,8	MCF-7	breast:
3	chr15:33378525..33379153-chr15:33992666..33993558,2	K562	blood:
4	chr15:33583780..33585600-chr15:33992062..33993955,12	MCF-7	breast:
5	chr15:33966586..33967428-chr15:33992470..33993382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259446	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11856134	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33988800-33993200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33988800-34002600	Weak transcription	Aorta	Aorta
3	chr15:33989000-34001600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:33991000-33993200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:33991600-33996800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:33992200-33993400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:33992200-33993600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:33992400-33993200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:33992400-33993200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr15:33992600-33993200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:33992800-33993400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr15:33992800-33993400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:33992800-33993400	Enhancers	Brain Angular Gyrus	brain
14	chr15:33992800-33993400	Genic enhancers	Brain Anterior Caudate	brain
15	chr15:33992800-33993400	Enhancers	Brain Hippocampus Middle	brain
16	chr15:33992800-33993400	Enhancers	Fetal Lung	lung
17	chr15:33992800-33993400	Genic enhancers	Fetal Muscle Leg	muscle
18	chr15:33992800-33993600	Enhancers	NH-A	brain
19	chr15:33992800-33994000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:33993000-33993200	Enhancers	Fetal Brain Male	brain
21	chr15:33993000-33993200	Bivalent Enhancer	Fetal Kidney	kidney
22	chr15:33993000-33993400	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:33993000-33993400	Enhancers	HUVEC	blood vessel
24	chr15:33993000-33993400	Enhancers	NHEK	skin
25	chr15:33993000-33994800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr15:33993000-34001600	Weak transcription	Fetal Brain Female	brain
27	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon

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