Variant report

Variant	rs11629813
Chromosome Location	chr15:59996914-59996915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3493420	chr15:59996809-59996978	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3493418	chr15:59996817-59997007	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3445484	chr15:59996829-59996948	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3493421	chr15:59996862-59996967	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv996299	chr15:59996867-59996927	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1064768	chr15:59996905-59996966	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59989800-59998400	Enhancers	Hela-S3	cervix
2	chr15:59993000-59998000	Weak transcription	HMEC	breast
3	chr15:59994400-59997800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:59996400-59997400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:59996600-59997800	Weak transcription	A549	lung
6	chr15:59996800-59997000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:59996800-59997000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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