Variant report

Variant	rs116298519
Chromosome Location	chr3:112409368-112409369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112362227..112366265-chr3:112408651..112412487,6	MCF-7	breast:
2	chr3:112403072..112405454-chr3:112407369..112409970,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv979866	chr3:112409140-112416297	Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112401200-112413800	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:112403600-112409600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:112404000-112409400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:112405400-112411800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:112405400-112412000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:112405800-112411800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:112406000-112411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:112407400-112415000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:112407600-112409600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:112407800-112413800	Weak transcription	NHDF-Ad	bronchial
11	chr3:112408000-112409400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:112408200-112409400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:112408400-112411800	Weak transcription	K562	blood
14	chr3:112408600-112409400	Enhancers	Fetal Thymus	thymus
15	chr3:112408600-112409400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:112408600-112409400	Enhancers	Osteobl	bone
17	chr3:112408800-112409400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:112408800-112409400	Enhancers	A549	lung
19	chr3:112408800-112412000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:112408800-112412400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:112408800-112413800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:112409000-112411400	Weak transcription	Adipose Nuclei	Adipose
23	chr3:112409200-112409400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:112409200-112411800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:112409200-112412400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:112409200-112414200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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