Variant report

Variant	rs11630414
Chromosome Location	chr15:45175813-45175814
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr15:45174588-45175835	GM12878	blood:	n/a	n/a
2	BCL11A	chr15:45175527-45176004	GM12878	blood:	n/a	n/a
3	RELA	chr15:45174393-45176061	GM18505	blood:	n/a	n/a
4	RUNX3	chr15:45174267-45176128	GM12878	blood:	n/a	n/a
5	MTA3	chr15:45174212-45176147	GM12878	blood:	n/a	n/a
6	IRF4	chr15:45175592-45176147	GM12878	blood:	n/a	n/a
7	PAX5	chr15:45175533-45176157	GM12878	blood:	n/a	chr15:45175860-45175869
8	BATF	chr15:45175615-45176106	GM12878	blood:	n/a	n/a
9	SPI1	chr15:45175732-45175969	GM12878	blood:	n/a	chr15:45175856-45175869 chr15:45175857-45175870
10	POLR2A	chr15:45173577-45176248	GM12892	blood:	n/a	n/a
11	POLR2A	chr15:45175806-45176228	GM12892	blood:	n/a	n/a
12	SPI1	chr15:45175525-45176052	GM12878	blood:	n/a	chr15:45175856-45175869 chr15:45175857-45175870
13	IKZF1	chr15:45174500-45176062	GM12878	blood:	n/a	n/a
14	SP1	chr15:45175467-45175867	HepG2	liver:	n/a	n/a
15	RUNX3	chr15:45174264-45176111	GM12878	blood:	n/a	n/a
16	POLR2A	chr15:45175430-45176259	GM12891	blood:	n/a	n/a
17	PML	chr15:45174243-45176178	GM12878	blood:	n/a	n/a
18	SRF	chr15:45175782-45175943	GM12878	blood:	n/a	n/a
19	SPI1	chr15:45175558-45176079	GM12891	blood:	n/a	chr15:45175856-45175869 chr15:45175857-45175870
20	POLR2A	chr15:45172927-45176281	GM12892	blood:	n/a	n/a
21	CUX1	chr15:45175709-45176002	GM12878	blood:	n/a	chr15:45175827-45175836
22	SPI1	chr15:45175528-45176078	GM12891	blood:	n/a	chr15:45175856-45175869 chr15:45175857-45175870
23	POLR2A	chr15:45175367-45176198	GM12892	blood:	n/a	n/a
24	SPI1	chr15:45175426-45176224	GM12878	blood:	n/a	chr15:45175856-45175869 chr15:45175857-45175870
25	POLR2A	chr15:45173444-45176220	GM12878	blood:	n/a	n/a
26	BHLHE40	chr15:45175681-45176068	GM12878	blood:	n/a	n/a
27	CEBPB	chr15:45173553-45176123	GM12878	blood:	n/a	n/a
28	SP1	chr15:45175513-45176097	GM12878	blood:	n/a	n/a
29	SP1	chr15:45174743-45176238	GM12878	blood:	n/a	n/a
30	POLR2A	chr15:45173571-45176215	GM12878	blood:	n/a	n/a
31	PAX5	chr15:45175695-45176216	GM12878	blood:	n/a	chr15:45175860-45175869
32	RELA	chr15:45174549-45176084	GM18951	blood:	n/a	n/a
33	BCL11A	chr15:45175417-45176211	GM12878	blood:	n/a	n/a
34	RELA	chr15:45174545-45176069	GM12878	blood:	n/a	n/a
35	NFIC	chr15:45175462-45176273	GM12878	blood:	n/a	n/a
36	EP300	chr15:45175691-45176016	GM12878	blood:	n/a	chr15:45175859-45175868
37	RELA	chr15:45175586-45176070	GM19193	blood:	n/a	n/a
38	BATF	chr15:45174500-45176189	GM12878	blood:	n/a	n/a
39	PAX5	chr15:45175444-45176314	GM12878	blood:	n/a	chr15:45175860-45175869
40	NRF1	chr15:45175727-45176058	GM12878	blood:	n/a	chr15:45175878-45175889 chr15:45175875-45175889 chr15:45175878-45175887
41	POU2F2	chr15:45175458-45176265	GM12878	blood:	n/a	n/a
42	PAX5	chr15:45175804-45176122	GM12878	blood:	n/a	chr15:45175860-45175869
43	NFIC	chr15:45174426-45176563	GM12878	blood:	n/a	n/a
44	STAT3	chr15:45174789-45175973	GM12878	blood:	n/a	n/a
45	RELA	chr15:45175542-45176117	GM12891	blood:	n/a	n/a
46	FOXM1	chr15:45174348-45176130	GM12878	blood:	n/a	n/a
47	EBF1	chr15:45175404-45175844	GM12878	blood:	n/a	n/a
48	RELA	chr15:45174659-45176036	GM19099	blood:	n/a	n/a
49	POLR2A	chr15:45173117-45176120	GM12891	blood:	n/a	n/a
50	SPI1	chr15:45175791-45175929	K562	blood:	n/a	chr15:45175856-45175869 chr15:45175857-45175870

Variant related genes	Relation type
RNU1-119P	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11629478	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11629994	0.93[AMR][1000 genomes]
rs11630622	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633535	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11635774	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11635805	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11636334	0.93[AMR][1000 genomes]
rs11637803	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28643342	0.93[AMR][1000 genomes]
rs4774844	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57967845	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	nsv1048668	chr15:45094019-45284278	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1050650	chr15:45096539-45229584	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1048867	chr15:45100852-45289756	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1036204	chr15:45105374-45284278	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1047353	chr15:45105374-45289756	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1040940	chr15:45105374-45300844	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	esv2753133	chr15:45105876-45268182	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	esv34494	chr15:45105876-45268208	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv1041613	chr15:45111367-45284278	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1053041	chr15:45117399-45289756	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1040140	chr15:45121635-45289756	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv904181	chr15:45127793-45216343	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv976929	chr15:45136882-45199085	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv904182	chr15:45146708-45267670	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv904183	chr15:45146708-45279246	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv1050674	chr15:45152371-45250017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1037190	chr15:45152371-45259624	Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
22	nsv1053492	chr15:45152371-45275226	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv1054418	chr15:45152371-45289756	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv1037941	chr15:45152371-45296101	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv1048317	chr15:45152371-45326205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45173600-45177200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:45174200-45176000	Enhancers	HMEC	breast
3	chr15:45174600-45176000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:45174800-45177800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:45175000-45176000	Enhancers	HepG2	liver
6	chr15:45175000-45176200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:45175400-45176400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr15:45175400-45176400	Flanking Active TSS	GM12878-XiMat	blood
9	chr15:45175800-45185200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links