Variant report

Variant	rs116307995
Chromosome Location	chr9:73078694-73078695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73067600-73080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:73071400-73081800	Weak transcription	Lung	lung
3	chr9:73071600-73082200	Weak transcription	Pancreas	Pancrea
4	chr9:73072400-73084800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:73077000-73079200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:73077600-73080400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:73077600-73080400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:73077600-73087800	Weak transcription	Gastric	stomach
9	chr9:73078200-73082200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:73078400-73078800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:73078600-73078800	Enhancers	Psoas Muscle	Psoas
12	chr9:73078600-73078800	Enhancers	Right Atrium	heart
13	chr9:73078600-73078800	Enhancers	Right Ventricle	heart
14	chr9:73078600-73079000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:73078600-73079200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:73078600-73079200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:73078600-73079400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links