Variant report

Variant	rs11631351
Chromosome Location	chr15:50754779-50754780
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50647488..50650255-chr15:50752779..50754859,2	MCF-7	breast:
2	chr15:50645594..50649830-chr15:50754186..50757976,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10519276	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519278	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11070774	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070775	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070777	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070778	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070779	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070785	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11070786	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11070787	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11070788	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11630309	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11631398	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11632697	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11632708	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11632823	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633608	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11633624	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11633765	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11634832	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11637031	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11637104	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11637111	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11638198	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11638390	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12439248	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12440152	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17519466	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17519536	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17597852	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17597915	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17598061	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2414044	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2414045	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34659874	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4380013	0.84[EUR][1000 genomes]
rs4774569	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774570	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774571	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775883	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775884	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775885	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775886	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775888	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775889	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62016938	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016939	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016940	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016942	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016943	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016944	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016945	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62016947	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019074	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62019075	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019076	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019077	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019078	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62019079	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019080	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019082	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019084	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019085	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019087	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62019112	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62019113	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62019115	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62019116	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62019117	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7165464	0.94[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169778	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7170114	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181536	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7182569	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182980	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7494907	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8030373	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8037446	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037553	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs934636	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv904210	chr15:50702058-50786024	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv1049576	chr15:50744781-50843495	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
12	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50717600-50764600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:50717600-50774800	Weak transcription	Stomach Mucosa	stomach
3	chr15:50717800-50758800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:50718000-50755400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:50718000-50757000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:50722800-50764600	Weak transcription	Esophagus	oesophagus
7	chr15:50724600-50755800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:50724800-50764600	Weak transcription	Pancreas	Pancrea
9	chr15:50733400-50785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:50733600-50758200	Weak transcription	HMEC	breast
11	chr15:50733600-50758800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:50733800-50755800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:50734000-50763200	Weak transcription	Brain Anterior Caudate	brain
14	chr15:50734000-50776400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:50734000-50785600	Weak transcription	Fetal Brain Male	brain
16	chr15:50734600-50772600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:50735400-50764600	Weak transcription	Psoas Muscle	Psoas
18	chr15:50735600-50773000	Weak transcription	Brain Substantia Nigra	brain
19	chr15:50736200-50758600	Weak transcription	Right Ventricle	heart
20	chr15:50737200-50764800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:50737400-50755600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:50737400-50756800	Weak transcription	NHEK	skin
23	chr15:50738200-50796800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:50738400-50755800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:50739400-50755200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:50740200-50777200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:50740800-50770200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:50741800-50797000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr15:50742400-50760000	Strong transcription	Duodenum Mucosa	Duodenum
30	chr15:50742600-50760000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:50744000-50782400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:50744000-50789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:50744800-50755600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:50745400-50756000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:50745400-50771200	Weak transcription	NHLF	lung
36	chr15:50745600-50773800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr15:50746000-50755800	Strong transcription	Fetal Intestine Small	intestine
38	chr15:50746200-50761000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:50746200-50794400	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:50746400-50767200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:50746600-50756000	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:50747000-50759000	Weak transcription	Fetal Kidney	kidney
43	chr15:50747400-50754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:50747600-50764600	Weak transcription	Aorta	Aorta
45	chr15:50747600-50764600	Weak transcription	Gastric	stomach
46	chr15:50747800-50763600	Weak transcription	Brain Angular Gyrus	brain
47	chr15:50747800-50763600	Weak transcription	Brain Germinal Matrix	brain
48	chr15:50747800-50772800	Weak transcription	Brain Hippocampus Middle	brain
49	chr15:50748000-50768200	Weak transcription	HUVEC	blood vessel
50	chr15:50748200-50754800	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links