Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73644236..73646707-chr15:73654273..73657085,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11638230	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11638264	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16957727	1.00[YRI][hapmap]
rs3784801	1.00[YRI][hapmap]
rs56390326	0.87[AMR][1000 genomes]
rs56777763	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74022957	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73635200-73646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73643400-73648400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73644000-73647000	Enhancers	Left Ventricle	heart
4	chr15:73644800-73655800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:73645000-73650400	Weak transcription	Right Atrium	heart
6	chr15:73645000-73655400	Weak transcription	Fetal Brain Female	brain
7	chr15:73645400-73647000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:73645400-73654800	Enhancers	Fetal Heart	heart
9	chr15:73645800-73646800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:73645800-73647000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr15:73645800-73647200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:73646000-73646800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:73646000-73646800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr15:73646000-73647000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:73646000-73647000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:73646200-73646600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:73646400-73646800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:73646400-73647000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:73646400-73647400	Weak transcription	Right Ventricle	heart
20	chr15:73646400-73649800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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