Variant report

Variant	rs11633090
Chromosome Location	chr15:74786593-74786594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34439749	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74755200-74789200	Weak transcription	NHEK	skin
6	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
10	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:74767600-74804800	Weak transcription	Lung	lung
14	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:74770000-74796600	Weak transcription	HepG2	liver
17	chr15:74770800-74791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:74774000-74789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:74774000-74798400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:74774000-74800000	Weak transcription	Pancreas	Pancrea
21	chr15:74774000-74803200	Weak transcription	Spleen	Spleen
22	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:74774200-74789400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:74774200-74800200	Weak transcription	Gastric	stomach
25	chr15:74774400-74803200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:74774600-74803200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:74775800-74807000	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:74782000-74800400	Weak transcription	Adipose Nuclei	Adipose
29	chr15:74782200-74799600	Weak transcription	Placenta	Placenta
30	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
31	chr15:74782600-74789600	Weak transcription	HSMM	muscle
32	chr15:74782600-74796200	Weak transcription	Hela-S3	cervix
33	chr15:74782800-74787400	Weak transcription	Thymus	Thymus
34	chr15:74782800-74789400	Weak transcription	Primary T cells from cord blood	blood
35	chr15:74782800-74789800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:74782800-74791800	Weak transcription	K562	blood
37	chr15:74782800-74794400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:74782800-74794400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr15:74782800-74794400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:74782800-74794800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:74782800-74796600	Weak transcription	Primary B cells from cord blood	blood
42	chr15:74782800-74798400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:74782800-74798800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:74782800-74799000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:74782800-74799400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:74782800-74799600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:74782800-74800000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:74782800-74800000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:74782800-74803400	Weak transcription	GM12878-XiMat	blood
50	chr15:74782800-74803800	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links