Variant report

Variant	rs116335086
Chromosome Location	chr15:74555221-74555222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1035367	chr15:74554972-74586538	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74548600-74558000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:74549200-74556200	Enhancers	Brain Germinal Matrix	brain
3	chr15:74549400-74557800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:74550000-74557800	Enhancers	Fetal Brain Male	brain
5	chr15:74551600-74555600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:74551600-74555600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:74552200-74555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:74552200-74556000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:74552400-74555600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:74552400-74555800	Weak transcription	Fetal Heart	heart
11	chr15:74553200-74556600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:74553400-74556000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74553800-74556400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr15:74553800-74557400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:74554400-74557600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:74555000-74555400	Enhancers	HUVEC	blood vessel
17	chr15:74555000-74556000	Weak transcription	Spleen	Spleen
18	chr15:74555200-74557600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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