Variant report

Variant	rs116336547
Chromosome Location	chr18:9048784-9048785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9038800-9049000	Weak transcription	K562	blood
2	chr18:9047600-9049400	Enhancers	HepG2	liver
3	chr18:9047800-9049600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:9047800-9049600	Enhancers	NHDF-Ad	bronchial
5	chr18:9047800-9049800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr18:9048000-9049800	Enhancers	Osteobl	bone
7	chr18:9048200-9049200	Enhancers	HMEC	breast
8	chr18:9048200-9049400	Enhancers	NHEK	skin
9	chr18:9048200-9049600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr18:9048200-9050200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr18:9048400-9049200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr18:9048400-9049600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr18:9048400-9049800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr18:9048400-9049800	ZNF genes & repeats	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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