Variant report

Variant	rs11634253
Chromosome Location	chr15:44831888-44831889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44830130..44832077-chr17:59548012..59550896,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28409610	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28458328	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28486675	0.87[EUR][1000 genomes]
rs28661212	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57907343	1.00[AFR][1000 genomes]
rs961163	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44830200-44832800	Weak transcription	Small Intestine	intestine
2	chr15:44830400-44832600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:44830400-44832800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:44830400-44832800	Weak transcription	Ovary	ovary
5	chr15:44830400-44833400	Weak transcription	Left Ventricle	heart
6	chr15:44830400-44835400	Weak transcription	Pancreas	Pancrea
7	chr15:44830400-44835600	Weak transcription	Gastric	stomach
8	chr15:44830400-44844000	Weak transcription	Lung	lung
9	chr15:44830400-44844400	Weak transcription	Spleen	Spleen
10	chr15:44830400-44848600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:44830400-44850200	Weak transcription	Aorta	Aorta
12	chr15:44830400-44855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:44830400-44855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:44830600-44833000	Weak transcription	Fetal Brain Female	brain
15	chr15:44830600-44833600	Weak transcription	Brain Angular Gyrus	brain
16	chr15:44830600-44835400	Weak transcription	Right Atrium	heart
17	chr15:44830800-44832600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:44830800-44833200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:44830800-44833600	Weak transcription	Brain Germinal Matrix	brain
20	chr15:44830800-44840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:44830800-44844400	Weak transcription	Colonic Mucosa	Colon
22	chr15:44831000-44832000	Weak transcription	Fetal Thymus	thymus
23	chr15:44831000-44832400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr15:44831000-44832400	Weak transcription	Fetal Intestine Large	intestine
25	chr15:44831000-44832600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:44831000-44832600	Weak transcription	Primary T cells from cord blood	blood
27	chr15:44831000-44832800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:44831000-44832800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:44831000-44832800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:44831000-44832800	Weak transcription	Fetal Lung	lung
31	chr15:44831000-44832800	Weak transcription	NHDF-Ad	bronchial
32	chr15:44831000-44833200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:44831000-44833200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:44831000-44833200	Weak transcription	Adipose Nuclei	Adipose
35	chr15:44831000-44833200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:44831000-44833200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:44831000-44833200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:44831000-44833400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:44831000-44833600	Weak transcription	Psoas Muscle	Psoas
40	chr15:44831000-44834000	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:44831000-44834800	Genic enhancers	Dnd41	blood
42	chr15:44831000-44836200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:44831000-44838000	Weak transcription	Stomach Mucosa	stomach
44	chr15:44831000-44844000	Weak transcription	Thymus	Thymus
45	chr15:44831000-44844400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:44831000-44844800	Weak transcription	Right Ventricle	heart
47	chr15:44831000-44856800	Weak transcription	Fetal Brain Male	brain
48	chr15:44831200-44832200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:44831200-44832400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:44831200-44832600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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