Variant report

Variant	rs11634621
Chromosome Location	chr15:78367926-78367927
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:78367900-78368050	HCPEpiC	choroid plexus:	n/a	n/a
2	FOXA2	chr15:78367805-78368186	A549	lung:	n/a	n/a
3	CTCF	chr15:78367920-78368070	HCPEpiC	choroid plexus:	n/a	n/a
4	CTCF	chr15:78367900-78368050	HUVEC	blood vessel:	n/a	n/a
5	CTCF	chr15:78367880-78368030	BJ	skin:	n/a	n/a
6	MAFK	chr15:78367787-78368847	IMR90	lung:	n/a	chr15:78368155-78368171 chr15:78368160-78368169 chr15:78368153-78368173 chr15:78368156-78368170 chr15:78368158-78368174 chr15:78368158-78368173 chr15:78368157-78368167
7	MYC	chr15:78367850-78368046	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr15:78367813-78368181	HUVEC	blood vessel:	n/a	n/a
9	FOS	chr15:78367808-78368295	MCF10A-Er-Src	breast:	n/a	chr15:78368158-78368168
10	GATA3	chr15:78367685-78368615	SK-N-SH	brain:	n/a	n/a
11	FOS	chr15:78367667-78368237	HUVEC	blood vessel:	n/a	chr15:78368158-78368168
12	POLR2A	chr15:78367612-78368334	HUVEC	blood vessel:	n/a	n/a
13	POLR2A	chr15:78367708-78368505	SK-N-SH	brain:	n/a	n/a
14	SIN3AK20	chr15:78367801-78368805	MCF-7	breast:	n/a	n/a
15	MAFK	chr15:78367737-78369024	GM12878	blood:	n/a	chr15:78368155-78368171 chr15:78368160-78368169 chr15:78368153-78368173 chr15:78368156-78368170 chr15:78368158-78368174 chr15:78368158-78368173 chr15:78368157-78368167
16	POLR2A	chr15:78367898-78368425	HUVEC	blood vessel:	n/a	n/a
17	FOS	chr15:78367836-78368040	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr15:78367894-78368000	MCF10A-Er-Src	breast:	n/a	n/a
19	MAFK	chr15:78367876-78368450	HepG2	liver:	n/a	chr15:78368155-78368171 chr15:78368160-78368169 chr15:78368153-78368173 chr15:78368156-78368170 chr15:78368158-78368174 chr15:78368158-78368173 chr15:78368157-78368167
20	GATA2	chr15:78367716-78368058	HUVEC	blood vessel:	n/a	n/a
21	POLR2A	chr15:78367712-78370170	IMR90	lung:	n/a	n/a
22	KAP1	chr15:78367875-78368759	HEK293	kidney:	n/a	n/a
23	MAFK	chr15:78367910-78368423	H1-hESC	embryonic stem cell:	n/a	chr15:78368155-78368171 chr15:78368160-78368169 chr15:78368153-78368173 chr15:78368156-78368170 chr15:78368158-78368174 chr15:78368158-78368173 chr15:78368157-78368167
24	RAD21	chr15:78367832-78368794	IMR90	lung:	n/a	n/a
25	CTCF	chr15:78367920-78368070	HMF	breast:	n/a	n/a
26	POLR2A	chr15:78367926-78368006	ProgFib	skin:	n/a	n/a
27	FOXA1	chr15:78367825-78368168	HepG2	liver:	n/a	n/a
28	MYC	chr15:78367829-78368435	MCF10A-Er-Src	breast:	n/a	n/a
29	REST	chr15:78367839-78368144	SK-N-SH	brain:	n/a	n/a
30	FOXA2	chr15:78367798-78368040	HepG2	liver:	n/a	n/a
31	ZNF263	chr15:78367875-78369900	HEK293-T-REx	kidney:	n/a	chr15:78369466-78369475 chr15:78368347-78368368 chr15:78369547-78369556
32	JUND	chr15:78367626-78368651	SK-N-SH	brain:	n/a	chr15:78368158-78368168
33	FOXA1	chr15:78367734-78368131	HepG2	liver:	n/a	n/a
34	TCF12	chr15:78367684-78368717	SK-N-SH	brain:	n/a	n/a
35	GATA3	chr15:78367693-78368231	SK-N-SH	brain:	n/a	n/a
36	CTCF	chr15:78367840-78367990	HRE	kidney:	n/a	n/a
37	FOSL2	chr15:78367716-78368408	SK-N-SH	brain:	n/a	chr15:78368158-78368168

No.	Distal block	Cell Line	Cell type
1	chr15:78360126..78361739-chr15:78367541..78369302,2	K562	blood:
2	chr15:78367037..78369598-chr15:78400476..78402359,2	MCF-7	breast:
3	chr15:78357782..78360184-chr15:78367009..78369493,4	MCF-7	breast:
4	chr15:78362119..78363904-chr15:78366538..78368474,2	MCF-7	breast:
5	chr15:78365861..78368679-chr6:26247536..26249940,2	MCF-7	breast:
6	chr15:78303690..78306677-chr15:78365888..78368992,3	MCF-7	breast:
7	chr15:78362996..78365897-chr15:78366671..78369435,4	MCF-7	breast:

Variant related genes	Relation type
SH2D7	TF binding region
ENSG00000167202	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11629761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11639164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11854491	0.96[AFR][1000 genomes]
rs16969447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2044101	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28394000	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28485414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28519575	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28590577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28593221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78361400-78368000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:78361400-78368000	Weak transcription	Fetal Heart	heart
3	chr15:78361400-78368200	Weak transcription	Brain Germinal Matrix	brain
4	chr15:78361600-78369200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:78362800-78368000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:78362800-78368000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:78362800-78368000	Weak transcription	Esophagus	oesophagus
8	chr15:78362800-78369200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:78363000-78368000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:78363000-78368000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:78363200-78368000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:78365000-78368000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:78365000-78368000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:78365000-78368000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:78365000-78368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:78365200-78368000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:78365200-78368000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:78365200-78368000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:78365200-78368000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:78365200-78368000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr15:78365200-78368000	Weak transcription	Gastric	stomach
22	chr15:78365200-78368000	Weak transcription	Lung	lung
23	chr15:78365200-78368000	Weak transcription	K562	blood
24	chr15:78365200-78368200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:78365200-78368200	Weak transcription	Right Ventricle	heart
26	chr15:78365200-78368400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:78365200-78368400	Weak transcription	Fetal Brain Female	brain
28	chr15:78365400-78368000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:78365400-78368000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:78365400-78368000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:78365400-78368000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:78365400-78368000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr15:78365400-78368000	Weak transcription	Pancreas	Pancrea
34	chr15:78365400-78368000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:78365400-78368000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:78365400-78368000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:78365400-78368000	Weak transcription	Spleen	Spleen
38	chr15:78365400-78368400	Weak transcription	Small Intestine	intestine
39	chr15:78365600-78368000	Weak transcription	Aorta	Aorta
40	chr15:78365600-78368000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:78365800-78368000	Weak transcription	Primary B cells from cord blood	blood
42	chr15:78365800-78368000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:78366000-78368000	Weak transcription	Brain Substantia Nigra	brain
44	chr15:78366000-78368000	Weak transcription	Fetal Brain Male	brain
45	chr15:78366600-78368200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr15:78366800-78368000	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr15:78366800-78369600	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr15:78367000-78368000	Enhancers	Brain Angular Gyrus	brain
49	chr15:78367000-78368000	Enhancers	Left Ventricle	heart
50	chr15:78367000-78368000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links