Variant report

Variant	rs11635984
Chromosome Location	chr15:33012232-33012233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:33012053-33012344	U87	brain:	n/a	n/a
2	NR2F2	chr15:33012071-33012433	MCF-7	breast:	n/a	n/a
3	POLR2A	chr15:33007578-33017851	IMR90	lung:	n/a	n/a
4	MAZ	chr15:33009340-33012500	IMR90	lung:	n/a	n/a
5	MXI1	chr15:33009663-33013329	IMR90	lung:	n/a	n/a
6	CHD1	chr15:33007205-33016414	IMR90	lung:	n/a	chr15:33010001-33010011 chr15:33009561-33009571
7	POLR2A	chr15:33009689-33015806	ProgFib	skin:	n/a	n/a

Variant related genes	Relation type
ENSG00000259721	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11638007	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1534594	0.96[ASN][1000 genomes]
rs1919364	1.00[ASN][1000 genomes]
rs7497354	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33008400-33012600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr15:33008800-33012600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:33009000-33013000	Bivalent/Poised TSS	NHLF	lung
4	chr15:33009400-33012400	Active TSS	HSMM	muscle
5	chr15:33009400-33012600	Active TSS	NHDF-Ad	bronchial
6	chr15:33009400-33012800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr15:33009600-33012400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:33009600-33013400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:33010400-33015000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:33010600-33015000	Transcr. at gene 5' and 3'	Osteobl	bone
11	chr15:33010800-33012800	Active TSS	HSMMtube	muscle
12	chr15:33011000-33012800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
13	chr15:33011000-33012800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
14	chr15:33011400-33013600	Active TSS	Stomach Smooth Muscle	stomach
15	chr15:33011600-33012400	Active TSS	Colon Smooth Muscle	Colon
16	chr15:33011600-33013400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:33011800-33012400	Enhancers	Liver	Liver
18	chr15:33011800-33012600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:33011800-33012600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr15:33012000-33012400	Bivalent Enhancer	A549	lung
21	chr15:33012000-33012800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:33012000-33012800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
23	chr15:33012000-33012800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:33012000-33012800	Active TSS	Colonic Mucosa	Colon
25	chr15:33012000-33013800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:33012000-33023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:33012200-33012400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:33012200-33012400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
29	chr15:33012200-33012400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr15:33012200-33012600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:33012200-33013200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:33012200-33013600	Transcr. at gene 5' and 3'	NH-A	brain

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