Variant report

Variant	rs116360542
Chromosome Location	chr15:59694208-59694209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:59694017-59694287	T-47D	breast:	n/a	n/a
2	FOXA1	chr15:59693879-59694449	HepG2	liver:	n/a	n/a
3	FOXA1	chr15:59694025-59694351	HepG2	liver:	n/a	n/a
4	FOXA1	chr15:59693922-59694312	HepG2	liver:	n/a	n/a
5	FOXA1	chr15:59694065-59694272	T-47D	breast:	n/a	n/a
6	FOXA1	chr15:59694004-59694449	HepG2	liver:	n/a	n/a
7	FOXA2	chr15:59694018-59694327	A549	lung:	n/a	n/a
8	FOXA2	chr15:59694066-59694322	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000259750	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv904277	chr15:59666992-59705005	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
6	nsv524569	chr15:59666992-59712427	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
7	nsv974585	chr15:59693187-59700169	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59675200-59703000	Weak transcription	Aorta	Aorta
2	chr15:59688400-59698800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:59690800-59695600	Weak transcription	Lung	lung
4	chr15:59690800-59702600	Weak transcription	Left Ventricle	heart
5	chr15:59691800-59694600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr15:59692000-59694800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr15:59692600-59694800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr15:59692600-59698000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:59692600-59701400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:59692800-59694600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:59692800-59694800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:59692800-59694800	Enhancers	Primary B cells from peripheral blood	blood
13	chr15:59692800-59694800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:59692800-59694800	Enhancers	Brain Germinal Matrix	brain
15	chr15:59692800-59695600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:59692800-59698200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:59692800-59704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:59693000-59694400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:59693000-59694800	Enhancers	Primary B cells from cord blood	blood
20	chr15:59693000-59695800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:59693000-59704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:59693000-59704800	Weak transcription	Spleen	Spleen
23	chr15:59693000-59705000	Weak transcription	Fetal Thymus	thymus
24	chr15:59693400-59694400	Enhancers	Liver	Liver
25	chr15:59693400-59694600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:59693600-59694600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:59693600-59695000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr15:59693600-59700000	Weak transcription	Pancreas	Pancrea
29	chr15:59693600-59702200	Weak transcription	Colonic Mucosa	Colon
30	chr15:59693800-59694400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr15:59693800-59694400	Enhancers	A549	lung
32	chr15:59693800-59694600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:59693800-59694600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:59693800-59698400	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:59694000-59694400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:59694000-59694400	Enhancers	Stomach Mucosa	stomach
37	chr15:59694000-59694600	Bivalent Enhancer	HepG2	liver
38	chr15:59694000-59694800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:59694000-59695000	Enhancers	GM12878-XiMat	blood
40	chr15:59694200-59694400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:59694200-59694400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:59694200-59694600	Enhancers	H9 Cell Line	embryonic stem cell
43	chr15:59694200-59694600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr15:59694200-59694600	Enhancers	Fetal Brain Female	brain
45	chr15:59694200-59694600	Enhancers	Small Intestine	intestine
46	chr15:59694200-59694800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:59694200-59694800	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr15:59694200-59698200	Weak transcription	Adipose Nuclei	Adipose

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