Variant report

Variant	rs11636181
Chromosome Location	chr15:93370697-93370698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93368093..93370733-chr15:93448780..93451339,2	K562	blood:
2	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
3	chr15:93369245..93370837-chr15:93374865..93377688,2	K562	blood:
4	chr15:93369425..93372173-chr15:93446151..93448036,4	K562	blood:
5	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000272888	Chromatin interaction
ENSG00000264173	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28637285	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077882	0.81[EUR][1000 genomes]
rs7176890	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1042292	chr15:93286333-93374887	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv984199	chr15:93288362-93381522	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
6	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93364000-93373000	Weak transcription	Aorta	Aorta
2	chr15:93364200-93373000	Weak transcription	Fetal Heart	heart
3	chr15:93364400-93373400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:93365000-93372600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:93365200-93372800	Weak transcription	Pancreas	Pancrea
6	chr15:93365200-93374200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:93365400-93372600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:93365600-93374000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:93365800-93372800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:93365800-93374200	Weak transcription	Hela-S3	cervix
11	chr15:93366000-93373600	Weak transcription	HMEC	breast
12	chr15:93366000-93374200	Weak transcription	Stomach Mucosa	stomach
13	chr15:93366200-93373200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:93366200-93373400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:93366400-93372600	Weak transcription	Brain Substantia Nigra	brain
16	chr15:93366400-93373000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:93366400-93373600	Weak transcription	Fetal Brain Male	brain
18	chr15:93366400-93374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:93366400-93376000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:93366600-93372600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:93366600-93372600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:93366600-93373000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:93366600-93373400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:93366600-93373400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:93366600-93373600	Weak transcription	Fetal Lung	lung
26	chr15:93366600-93374000	Weak transcription	Lung	lung
27	chr15:93366800-93372600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:93366800-93373000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:93366800-93373000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:93366800-93373000	Weak transcription	Fetal Kidney	kidney
31	chr15:93366800-93373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:93366800-93373600	Weak transcription	Fetal Thymus	thymus
33	chr15:93367000-93372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:93367000-93373400	Weak transcription	Thymus	Thymus
35	chr15:93368200-93373200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:93368200-93374400	Weak transcription	HSMM	muscle
37	chr15:93368400-93374200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:93368400-93374200	Weak transcription	A549	lung
39	chr15:93368400-93374600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:93368400-93374800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:93368600-93373200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:93369000-93370800	Weak transcription	Placenta	Placenta
43	chr15:93369000-93371000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr15:93369000-93371000	Enhancers	Primary B cells from peripheral blood	blood
45	chr15:93369200-93373600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:93369200-93374200	Weak transcription	K562	blood
47	chr15:93369200-93375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:93369400-93372600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:93369400-93373000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr15:93369400-93373200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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