Variant report

Variant	rs11636226
Chromosome Location	chr15:50357225-50357226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11631945	0.91[ASN][1000 genomes]
rs11632040	1.00[ASN][1000 genomes]
rs11633979	1.00[ASN][1000 genomes]
rs11639262	1.00[ASN][1000 genomes]
rs12101762	0.89[ASN][1000 genomes]
rs12595202	0.97[ASN][1000 genomes]
rs17414023	0.91[ASN][1000 genomes]
rs17414093	0.94[ASN][1000 genomes]
rs28373601	0.89[ASN][1000 genomes]
rs28460885	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492371	0.91[ASN][1000 genomes]
rs28699536	0.91[ASN][1000 genomes]
rs4405488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71469677	0.86[ASN][1000 genomes]
rs8025221	0.81[EUR][1000 genomes]
rs8041437	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50348200-50359800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:50348600-50358600	Weak transcription	Fetal Intestine Large	intestine
3	chr15:50351000-50358400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:50352000-50358400	Weak transcription	Fetal Intestine Small	intestine
5	chr15:50352000-50358600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:50352000-50358600	Weak transcription	Small Intestine	intestine
7	chr15:50352400-50359400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:50353200-50357800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:50354600-50360400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr15:50356000-50360600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:50356400-50358000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50356400-50359200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:50356600-50357600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:50356600-50362000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:50357000-50357600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr15:50357000-50359000	Enhancers	Colon Smooth Muscle	Colon
17	chr15:50357200-50357800	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:50357200-50358600	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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