Variant report

Variant	rs11636831
Chromosome Location	chr15:58905888-58905889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58903672..58906413-chr15:58914641..58916719,2	K562	blood:
2	chr15:58898609..58900839-chr15:58904046..58906383,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11637365	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11853043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16940712	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:58882600-58907600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:58885800-58906800	Weak transcription	Fetal Brain Male	brain
4	chr15:58887200-58906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:58888000-58906200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:58889600-58919800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:58889800-58918800	Weak transcription	Osteobl	bone
9	chr15:58889800-58921000	Weak transcription	Ovary	ovary
10	chr15:58890000-58906200	Weak transcription	Small Intestine	intestine
11	chr15:58891000-58906800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:58893800-58906200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr15:58893800-58906200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:58894800-58906200	Strong transcription	Primary B cells from cord blood	blood
16	chr15:58894800-58906800	Weak transcription	Psoas Muscle	Psoas
17	chr15:58899200-58920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:58899600-58906200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr15:58900000-58906000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:58900200-58908400	Weak transcription	Hela-S3	cervix
21	chr15:58900400-58906600	Strong transcription	Dnd41	blood
22	chr15:58901000-58906000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:58901000-58906800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:58901400-58906000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:58901400-58906000	Strong transcription	GM12878-XiMat	blood
26	chr15:58901400-58918800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:58901600-58906200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:58901600-58906800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:58901600-58906800	Weak transcription	Fetal Heart	heart
30	chr15:58901600-58913400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:58902600-58906600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:58902800-58911200	Weak transcription	HMEC	breast
33	chr15:58903000-58906000	Weak transcription	Fetal Kidney	kidney
34	chr15:58903000-58906200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:58903000-58906200	Weak transcription	NH-A	brain
36	chr15:58903200-58906000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:58903200-58906000	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:58903200-58906600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:58903200-58913400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:58903400-58906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:58903400-58906200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:58903400-58906600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:58903400-58906800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:58903400-58906800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:58903400-58918600	Weak transcription	HUVEC	blood vessel
46	chr15:58903800-58906000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:58903800-58914200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:58904200-58906600	Strong transcription	Primary T cells from cord blood	blood
49	chr15:58904200-58907800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:58904400-58906200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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