Variant report

Variant	rs11636932
Chromosome Location	chr15:38853635-38853636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:38852140-38857375	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:38850288-38854202	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:38842649..38844707-chr15:38853512..38856780,3	MCF-7	breast:

Variant related genes	Relation type
RASGRP1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs35843594	0.91[EUR][1000 genomes]
rs4923800	0.83[EUR][1000 genomes]
rs4924274	0.85[EUR][1000 genomes]
rs55699464	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56170975	0.92[EUR][1000 genomes]
rs56231408	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60389828	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62006162	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62006164	0.90[EUR][1000 genomes]
rs62006165	0.82[EUR][1000 genomes]
rs62008298	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv904086	chr15:38829198-38931396	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38827400-38853800	Weak transcription	Esophagus	oesophagus
2	chr15:38836200-38855800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:38841600-38854400	Weak transcription	Dnd41	blood
4	chr15:38844800-38854600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:38845200-38854200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:38847200-38855800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:38848800-38854000	Genic enhancers	Fetal Thymus	thymus
8	chr15:38851000-38854200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:38851200-38854400	Weak transcription	Fetal Brain Male	brain
10	chr15:38851200-38854800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:38851200-38855800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:38851200-38855800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:38851200-38855800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:38851200-38856000	Weak transcription	Lung	lung
15	chr15:38851800-38854000	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:38851800-38854400	Weak transcription	Primary B cells from cord blood	blood
17	chr15:38851800-38855200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:38851800-38855800	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
19	chr15:38852000-38854800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:38852000-38856000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:38852000-38856200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr15:38852200-38853800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr15:38852200-38854800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr15:38852200-38855000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:38852200-38855400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr15:38852200-38856200	Flanking Active TSS	GM12878-XiMat	blood
27	chr15:38852400-38854200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr15:38852400-38854200	Enhancers	Thymus	Thymus
29	chr15:38852400-38855200	Weak transcription	Brain Anterior Caudate	brain
30	chr15:38852400-38855600	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:38852400-38855800	Weak transcription	Pancreas	Pancrea
32	chr15:38852400-38856200	Weak transcription	Right Atrium	heart
33	chr15:38852600-38853800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:38852600-38855200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr15:38852600-38855200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:38852600-38856000	Weak transcription	Fetal Heart	heart
37	chr15:38852800-38853800	Weak transcription	Small Intestine	intestine
38	chr15:38852800-38853800	Weak transcription	Stomach Mucosa	stomach
39	chr15:38852800-38854600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:38852800-38855200	Weak transcription	Spleen	Spleen
41	chr15:38852800-38855400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr15:38852800-38855600	Enhancers	Primary B cells from peripheral blood	blood
43	chr15:38852800-38855600	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr15:38853000-38854000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr15:38853200-38854800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:38853600-38854600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:38853600-38856800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
48	chr15:38853600-38857600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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