Variant report

Variant	rs11637772
Chromosome Location	chr15:29725168-29725169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11072884	0.80[EUR][1000 genomes]
rs11632507	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16955454	0.81[ASN][1000 genomes]
rs16955457	0.81[ASN][1000 genomes]
rs17670431	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58303225	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72719529	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74008451	0.81[ASN][1000 genomes]
rs8042303	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3364436	chr15:29459739-29853229	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29724000-29725200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:29724400-29725200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:29724400-29725600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:29724400-29726200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:29724600-29725200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:29724600-29725200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:29724800-29725400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:29724800-29726400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:29725000-29725200	Bivalent Enhancer	Brain Germinal Matrix	brain
10	chr15:29725000-29726600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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