Variant report

Variant	rs11637781
Chromosome Location	chr15:93284298-93284299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93277487..93279480-chr15:93283037..93284882,2	K562	blood:
2	chr15:93282638..93284980-chr15:93448208..93449935,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10459705	0.95[EUR][1000 genomes]
rs10459706	0.95[EUR][1000 genomes]
rs10459707	0.95[EUR][1000 genomes]
rs11074097	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11074099	0.95[EUR][1000 genomes]
rs11074101	0.95[EUR][1000 genomes]
rs12440115	0.94[EUR][1000 genomes]
rs12593012	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2892383	0.94[EUR][1000 genomes]
rs56162369	0.86[ASN][1000 genomes]
rs60697464	0.86[ASN][1000 genomes]
rs62020769	0.84[EUR][1000 genomes]
rs6496987	0.95[EUR][1000 genomes]
rs6496988	0.94[EUR][1000 genomes]
rs7170266	0.92[EUR][1000 genomes]
rs7170645	0.94[EUR][1000 genomes]
rs7177207	0.95[EUR][1000 genomes]
rs7178356	0.94[EUR][1000 genomes]
rs7183325	0.88[ASN][1000 genomes]
rs8024027	0.95[EUR][1000 genomes]
rs8031853	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8038242	0.95[EUR][1000 genomes]
rs8040223	0.89[EUR][1000 genomes]
rs8041271	0.94[EUR][1000 genomes]
rs8041895	0.94[EUR][1000 genomes]
rs8042841	0.95[EUR][1000 genomes]
rs8043355	0.95[EUR][1000 genomes]
rs9672507	0.94[EUR][1000 genomes]
rs9672578	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11637781	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93283000-93294400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links